Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  345 bits (884), Expect = 2e-99
 Identities = 200/437 (45%), Positives = 269/437 (61%), Gaps = 15/437 (3%)

Query: 15  VVVGLGITGLSVVNYLRKYHPSVTVQVIDTREAPPGQEQLSS---DVALHRSGWNLEWLL 71
           VV+GLG TGLSVV +L +    +   V+D+R  PPG + LS+   DV L   G++  +L+
Sbjct: 12  VVLGLGATGLSVVRFLAR--KGIVPLVMDSRRQPPGMDVLSAEFPDVTLVTGGFDCRYLV 69

Query: 72  NADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHVDTP---VIAITGSNGKSTVTD 128
            A  ++ +PGIA+ TPE++  +  GI V+GD+ELFA  +      V+AITGSNGKSTVT 
Sbjct: 70  QAQSIIISPGIAVDTPEVRAAMDMGIEVIGDVELFAREIQDMAPCVLAITGSNGKSTVTT 129

Query: 129 LSGVLANAAGVKAAVGGNIGVPALDLISPDVELYVLELSSFQLETTSSLKLKAAAFLNLS 188
           L G +A A     AVGGNIGVPAL+L+    EL+VLELSSFQLETT SL   A   LN+S
Sbjct: 130 LVGEMARADNKAVAVGGNIGVPALELLGKGAELFVLELSSFQLETTHSLHCIAGTCLNIS 189

Query: 189 EDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLA 248
           EDHMDRY  +E YRQAKLR++  ++ +V N DD  T PD   +      GV +   + L 
Sbjct: 190 EDHMDRYTDLEAYRQAKLRLYPQSKLSVYNRDDAATIPDEPRNTVSFGLGVPELDDWGLM 249

Query: 249 QHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLT 308
              G+ Y  A +  +M   +++L+G HN AN+L  +AL ++AG++    +   K +TGL 
Sbjct: 250 --DGKIYHGASE--IMNLLDVALIGSHNHANLLAAMALCEAAGISREAMVKVAKEFTGLA 305

Query: 309 HRCQVVADNHGIKWVNDSKATNVASTLAALSGLKIE-GQLYLLVGGVGKGADFTPLAPVL 367
           HRC++VA ++ I WVNDSKATNV +T+AAL+GL    G + L+ GG GKGADF PL   L
Sbjct: 306 HRCELVASHNSIAWVNDSKATNVGATVAALNGLAEHLGDIILIAGGDGKGADFEPLRGAL 365

Query: 368 ATLPVQLCCFGVDGHQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFK 427
             +   L   G DG +   L   A    +M   +   +     GD+VLLSPACAS D + 
Sbjct: 366 GAVS-HLITLGRDGDKIAVLKEGAIKVATMAEAVEKAKALANPGDIVLLSPACASLDMYT 424

Query: 428 NFMARGDIF-AQLARQY 443
           NFMARGD F A + R Y
Sbjct: 425 NFMARGDDFRANVERVY 441