Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score = 57.8 bits (138), Expect = 8e-13
 Identities = 70/281 (24%), Positives = 108/281 (38%), Gaps = 53/281 (18%)

Query: 114 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGG-----------NIGVPALDLISPDVELY 162
           V+ +TG+NGK++V+ L   L    G KAAV G           ++G    D +    +LY
Sbjct: 108 VVGVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLY 167

Query: 163 ----------VLELSSFQL--ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFD 210
                      +E+SS  L      ++  + A F NLS DH+D +  M++Y  AK R+F 
Sbjct: 168 DFEHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFA 227

Query: 211 HAETA--VVNADD---TQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMA 265
               +  V+N DD    Q F            G+  A  FS   H   ++ F       A
Sbjct: 228 FGSLSARVINLDDKVGEQWFD-----------GMGCATGFSCLGHAKADWRFENAHFHHA 276

Query: 266 -------------CAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQ 312
                          E  L+G  N++N+L  L  +   G      + A      +  R +
Sbjct: 277 GFSANLVWPGGQKPLECRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRME 336

Query: 313 VVADNHGIKWVNDSKATNVASTLAALSGL-KIEGQLYLLVG 352
                 G+  V D   T  A   A  +     EG L+++ G
Sbjct: 337 CFPRKDGVSLVVDYAHTPDAIEQALKAARHHCEGALWIVFG 377