Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD from Phaeobacter inhibens DSM 17395

 Score =  164 bits (416), Expect = 4e-45
 Identities = 135/406 (33%), Positives = 192/406 (47%), Gaps = 53/406 (13%)

Query: 76  VVTNPGIALATPE----IQQVLAAGIPVVGDIELFAWHVDTP----------VIAITGSN 121
           +V +PGI    P+    I   L AG+PV  DI LF   V T           ++A+TGSN
Sbjct: 70  LVVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERFDQAPRIVAVTGSN 129

Query: 122 GKSTVTDLSGVLANAAGVKAAVGGNIGVPALDLISPDVE-LYVLELSSFQLETTSSLKLK 180
           GKST   L   +   AG ++ + GNIG   LD+  P    + VLELSS+Q +   +L   
Sbjct: 130 GKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDPPGSGGIVVLELSSYQTDLARALTPD 189

Query: 181 AAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHA--ETAVVNADDTQ------TFPDHAAHL 232
            A F NLS DH+DR+ GM  Y  AK R+F     + A++  D+ +         + A+  
Sbjct: 190 VAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAIIGVDEDEGLYLAGQLSEAASDD 249

Query: 233 QVVTFGVEQAAQ---FSLAQHQG--REYLFARDEAVMACAELS-LVGRHNVANVLTVLAL 286
           +V+     Q      + +   +G   EY   R  A +   ++  L G HN  N     A 
Sbjct: 250 RVIRISASQKLTGLGWQVFARKGFLSEYRKGRQAASIDLRQMQGLPGAHNHQNACAAYAA 309

Query: 287 LDSAGVNFRLALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALS------- 339
             + G+  RL  DAL SY GL HR Q +A + G+++VNDSKATN+ S + ALS       
Sbjct: 310 ARALGLAPRLIEDALASYPGLPHRSQTIATHAGVRYVNDSKATNLDSAVKALSAFDNIRW 369

Query: 340 ---GLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARFYDS 396
              GL+ +G L  L G  GK      +    A   +Q             L   A    +
Sbjct: 370 ICGGLEKDGGLEALRGQTGKVRKAYVIGREAAGFAMQ-------------LDVEAEVCIT 416

Query: 397 MESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARG-DIFAQLAR 441
           M   +     + ++GD VLL+PA ASFDQ+ NF  RG D  A++A+
Sbjct: 417 MAEAVARASAEAETGDTVLLAPAAASFDQYDNFEQRGEDFIAEVAK 462