Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (RefSeq) from Shewanella loihica PV-4

 Score =  355 bits (910), Expect = e-102
 Identities = 211/435 (48%), Positives = 273/435 (62%), Gaps = 26/435 (5%)

Query: 15  VVVGLGITGLSVVNYLRKYHPSVTVQVIDTREAPPGQEQLSSD---VALHRSGWNLEWLL 71
           +V+GLG TGLSVV YL K    +T  V+D+RE PPG+E LS +   V L   G++  +L+
Sbjct: 8   IVLGLGATGLSVVRYLIKQ--GITPLVMDSRENPPGRETLSQEFPEVLLLTGGFDCRYLV 65

Query: 72  NADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV-DTP--VIAITGSNGKSTVTD 128
            A  +V +PGI L T E++  +  GI +VGD+ELFA  + D P  VI ITGSNGKSTVT 
Sbjct: 66  QASQIVVSPGIPLDTAEVRAAVDMGIDIVGDVELFARALADRPACVIGITGSNGKSTVTT 125

Query: 129 LSGVLANAAGVKAAVGGNIGVPALDLISPDVELYVLELSSFQLETTSSLKLKAAAFLNLS 188
           L G +A  AG+K AVGGNIGVP LDL+  D EL+VLELSSFQLETTSSL   +A  LN+S
Sbjct: 126 LVGEMAAKAGLKVAVGGNIGVPVLDLLDGDHELFVLELSSFQLETTSSLNCISATCLNIS 185

Query: 189 EDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHLQVVTFGV------EQA 242
           EDHMDRY  +E YRQAKLR++D  + A+ N DD  T P+   +    +FG+      E  
Sbjct: 186 EDHMDRYSDLESYRQAKLRLYDQTKLAIFNRDDLLTRPNEPMNQN--SFGLSLPEGDEWG 243

Query: 243 AQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALK 302
               +  H   EY        +A A++SLVG HN AN+L  +AL DSAGV+    ++  K
Sbjct: 244 VNHGVLVHGTTEY--------VAGAQVSLVGSHNQANLLVAMALADSAGVDKAAMVEVAK 295

Query: 303 SYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLK-IEGQLYLLVGGVGKGADFT 361
            + GL HRC++V  + G+ +VNDSKATNV +T+AAL GL   EGQ+ L+ GG GKGADF+
Sbjct: 296 QFKGLAHRCELVGKHQGVSYVNDSKATNVGATIAALQGLSDHEGQIILIAGGDGKGADFS 355

Query: 362 PLAPVLATLPVQLCCFGVDGHQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACA 421
            L   L  +  Q+   G DG +       A   +SM+  +       K GD+VLLSPACA
Sbjct: 356 TLRGALLGVG-QVITLGKDGDRIAEQFDGAIRVESMQEAVAQAAQLAKPGDLVLLSPACA 414

Query: 422 SFDQFKNFMARGDIF 436
           S D + NFMARGD F
Sbjct: 415 SLDMYANFMARGDDF 429