Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 42/327 (12%)

Query: 73  ADLVVTNPGIALATPEIQQVLAAGIP---------VVGDIELFAWHVDTPV-IAITGSNG 122
           A   + N  IAL    +++ LA  IP          +G I  +      P+ +A+TGSNG
Sbjct: 54  AATAIENGAIALL---VERELAFDIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNG 110

Query: 123 KSTVTDLSGVLANAAGVKAAVGGN----IGVPALDL-ISPDVELYVLELSSF---QLETT 174
           K++V ++   + +A        GN    IGVP   L ++P+ +  V EL +    +++ T
Sbjct: 111 KTSVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYT 170

Query: 175 SSLKLKAAAFLN-LSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADDTQTFPD--- 227
           S L     A +N +   H++ +       QAK  I++H +   TA++NADD   F D   
Sbjct: 171 SGLVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDA--FADVMR 228

Query: 228 -HAAHLQVVTFGVEQAA-----QFSLAQHQGRE---YLFARDEAVMAC-AELSLVGRHNV 277
             A H + ++F  ++ A           H+      Y F  + A  +C   L L GRH V
Sbjct: 229 VKAKHYKQLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQV 288

Query: 278 ANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAA 337
           +N L   ++  + G+N     + L   T +  R Q       ++ ++DS   N  S  AA
Sbjct: 289 SNALAAASVCIALGLNLTEIAEGLSQLTPVKGRMQPTQLGR-VRLIDDSYNANPVSVGAA 347

Query: 338 LSGLK-IEGQLYLLVGGVGKGADFTPL 363
           ++ LK I     L++G +G+  D  PL
Sbjct: 348 IAWLKEISENRCLVLGDLGELGDNAPL 374