Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  342 bits (877), Expect = 1e-98
 Identities = 196/441 (44%), Positives = 269/441 (60%), Gaps = 26/441 (5%)

Query: 15  VVVGLGITGLSVVNYLRKYHPSVTVQVIDTREAPPGQEQLSS---DVALHRSGWNLEWLL 71
           +V+GLG TGLSVV YL      +T  V+D+R  PPG E L+S   +V L   G++  +L+
Sbjct: 8   IVLGLGATGLSVVRYL--CGKGITPLVMDSRRQPPGAETLASSFPEVKLIAGGFDCRYLV 65

Query: 72  NADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHVDTP---VIAITGSNGKSTVTD 128
            A  ++ +PGIA+ TPE++  L  GI V+GD+ELFA  +      VI ITGSNGK+TVT 
Sbjct: 66  QATQIIISPGIAMNTPEVRAALDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTT 125

Query: 129 LSGVLANAAGVKAAVGGNIGVPALDLISPDVELYVLELSSFQLETTSSLKLKAAAFLNLS 188
           L G +   AG+  AVGGNIG+PALDL+  + +++VLELSSFQLETT SL   A+  LN++
Sbjct: 126 LVGEMLREAGIAVAVGGNIGIPALDLLKENADIFVLELSSFQLETTHSLNCVASTCLNVT 185

Query: 189 EDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLA 248
           EDHMDRY  M+ YR+AKLR++  + + + N DD  T P    +             F LA
Sbjct: 186 EDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQN----------SFGLA 235

Query: 249 QHQGREY------LFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALK 302
             +G E+      ++     +M   E+SL+G HN AN+L  +AL+ + GV+ ++  +  +
Sbjct: 236 PPEGDEWGICDSKIYHGHSEIMPITEVSLIGSHNHANLLAAMALVYAVGVDKQVMANVAR 295

Query: 303 SYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLKIE-GQLYLLVGGVGKGADFT 361
           ++TGL+HRC+VV    G+ +VNDSKATNV +T+AAL GL    G + L+ GG GKGADF+
Sbjct: 296 TFTGLSHRCEVVGVKGGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFS 355

Query: 362 PLAPVLATLPVQLCCFGVDGHQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACA 421
           PL   L T    L   G DG++   L   A   DSM + +        SGD+VLLSPACA
Sbjct: 356 PLEEPL-TKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAQLATSGDIVLLSPACA 414

Query: 422 SFDQFKNFMARGDIFAQLARQ 442
           S D + NFMARGD F     Q
Sbjct: 415 SLDMYSNFMARGDDFRSQVEQ 435