Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  151 bits (381), Expect = 5e-41
 Identities = 145/467 (31%), Positives = 209/467 (44%), Gaps = 55/467 (11%)

Query: 14  VVVVGLGITGLSVVNYLRKYHPSVTVQVIDTREAPPGQEQLSSDVALHRSGWNLEWLLNA 73
           + V+GLG +GL+    LR    +  +   D  EA    E           G+    L +A
Sbjct: 12  IAVLGLGRSGLATARALRA-GGATPLCWDDNTEARARAEA---------EGFACAPLKHA 61

Query: 74  DL------VVTNPGIA----LATPEIQQVLAAGIPVVGDIELFAWHVDTP---------- 113
           D       ++T+PGI        P I   ++ GIPV  DI LF     TP          
Sbjct: 62  DAFDGVAALITSPGIPHLYPTPNPTIALAMSLGIPVDNDIGLFFRSFATPDWDEFDSLPR 121

Query: 114 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVPALDLI-SPDVELYVLELSSFQLE 172
           VIA+TGSNGKST + L   +  AAG    + GNIG   LD+    D  + VLELSS+Q E
Sbjct: 122 VIAVTGSNGKSTTSALIHHVLTAAGRPTQLAGNIGRGVLDIDPGEDGGIVVLELSSYQTE 181

Query: 173 TTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIF--DHAETAVVNADDTQTFPDHAA 230
              +L    A F NLS DH+DR+ GM  Y  AK R+F     + AV+  D+ +      A
Sbjct: 182 LARALTPDIAVFTNLSPDHLDRHGGMGGYFAAKRRLFTIGGPDRAVIGTDEPEGL--FLA 239

Query: 231 HLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMA---------CAEL----SLVGRHNV 277
               V    ++  + + A+  G  ++ +  +  +A           +L     L G HN 
Sbjct: 240 SQLSVAPADDRVIRVTSAKPSGPGWVVSARKGFLAEHRKGRQTGSIDLRPIPGLPGAHNH 299

Query: 278 ANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAA 337
            N     A   S G+  R       S+ GL HR Q+V   +G+ +VNDSKATNV S   A
Sbjct: 300 QNAACAYAACRSLGLAPRQIEAGFASFKGLPHRSQIVGTANGVTFVNDSKATNVDSAAKA 359

Query: 338 LSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSA--RFYD 395
           L       ++  + GG+ K      L P L  +  +    G    +F    P       +
Sbjct: 360 LQAF---DRIRWIAGGLEKEGGLAALTPHLGGVR-KAYLIGRSAAEFALGIPDTPHEVCE 415

Query: 396 SMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARG-DIFAQLAR 441
           +M   + +   + + GD +LL+PA ASFDQ+ NF  RG D  A++A+
Sbjct: 416 TMARAVAAAVAEAEPGDTILLAPAAASFDQYDNFERRGEDFIAEVAK 462