Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (RefSeq) from Shewanella sp. ANA-3

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 43/287 (14%)

Query: 110 VDTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGN----IGVP--ALDLISPDVELYV 163
           VD   +A+TGSNGK++V ++   + +A        GN    IGVP   L L S D +  V
Sbjct: 98  VDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSED-KYGV 156

Query: 164 LELSS---FQLETTSSLKLKAAAFL-NLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAV 216
            EL +    +++ TSSL     A + N+   H++ +       QAK  I++H +   TA+
Sbjct: 157 FELGANHKGEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAI 216

Query: 217 VNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGRE------------------YLFA 258
           +NADD        A   V+    +Q  Q S +Q +G                    Y F 
Sbjct: 217 INADD--------AFADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFI 268

Query: 259 RDEAVMAC-AELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 317
            + A  +C   L L GRH V+N L   ++  + G++ +   + L   T +  R Q     
Sbjct: 269 LNYAGESCEVTLPLAGRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLG 328

Query: 318 HGIKWVNDSKATNVASTLAALSGLK-IEGQLYLLVGGVGKGADFTPL 363
             ++ ++DS   N  S  AA++ LK I     L++G +G+  D  PL
Sbjct: 329 R-VRLIDDSYNANPVSVGAAIAWLKEISENRCLVLGDLGELGDNAPL 374