Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  341 bits (874), Expect = 3e-98
 Identities = 196/441 (44%), Positives = 268/441 (60%), Gaps = 26/441 (5%)

Query: 15  VVVGLGITGLSVVNYLRKYHPSVTVQVIDTREAPPGQEQLSS---DVALHRSGWNLEWLL 71
           +V+GLG TGLSVV YL      +T  V+D+R  PPG + L+S   +V L   G++  +L+
Sbjct: 8   IVLGLGATGLSVVRYL--CGKGITPLVMDSRRQPPGADTLASAFPEVQLIAGGFDCRYLV 65

Query: 72  NADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHVDTP---VIAITGSNGKSTVTD 128
            A  ++ +PGIA+ TPE++  L  GI V+GD+ELFA  +      VI ITGSNGKSTVT 
Sbjct: 66  QATQIIISPGIAIDTPEVRAALDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTT 125

Query: 129 LSGVLANAAGVKAAVGGNIGVPALDLISPDVELYVLELSSFQLETTSSLKLKAAAFLNLS 188
           L G +   AG+  AVGGNIG+PALDL++ + +++VLELSSFQLETT SL   A+  LN++
Sbjct: 126 LVGEMLREAGMAVAVGGNIGIPALDLLTENADIFVLELSSFQLETTHSLNCVASTCLNVT 185

Query: 189 EDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLA 248
           EDHMDRY  M+ YR+AKLR++  + + + N DD  T P    +             F LA
Sbjct: 186 EDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQN----------SFGLA 235

Query: 249 QHQGREY------LFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALK 302
             +G E+      ++     +M   E+SL+G HN AN+L  +AL+ + GV  ++     +
Sbjct: 236 PPEGDEWGICDSKIYHGHSEIMPITEVSLIGSHNHANLLAAMALVYAVGVEKQVMAKVAR 295

Query: 303 SYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLKIE-GQLYLLVGGVGKGADFT 361
           ++TGL+HRC+VV    G+ +VNDSKATNV +T+AAL GL    G + L+ GG GKGADF+
Sbjct: 296 TFTGLSHRCEVVGVKAGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFS 355

Query: 362 PLAPVLATLPVQLCCFGVDGHQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACA 421
           PL   L T    L   G DG++   L   A   DSM + +        SGD+VLLSPACA
Sbjct: 356 PLVEPL-TKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAELATSGDIVLLSPACA 414

Query: 422 SFDQFKNFMARGDIFAQLARQ 442
           S D + NFMARGD F     Q
Sbjct: 415 SLDMYSNFMARGDDFRSQVEQ 435