Pairwise Alignments

Query, 398 a.a., cell division protein FtsW from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., rod shape-determining protein rodA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  148 bits (373), Expect = 3e-40
 Identities = 110/380 (28%), Positives = 194/380 (51%), Gaps = 36/380 (9%)

Query: 26  QLVWIAF-GLMLIGLVMVTSASFPISSRLTDQPFHFMFRHAIFLLLAFLTSSMVLQVPLD 84
           +++WI F  L LI ++ V SA+  ++ +  D  +  + +H+I L++  +    +  VP  
Sbjct: 12  KVIWIIFLCLCLISIIEVFSAASTLTYKSGDH-WGPITQHSIILMVGAVVVVFLHNVPYK 70

Query: 85  RWMKYSSLLLGISFFLLIVV----LVVGKSVNGASRWIPLGLFNLQPAEVAKLSLFIFMS 140
            +  +   L  IS  LL  V    ++ G  VNGA+RW+       QP+E+AK+++ I +S
Sbjct: 71  WFQVFPVFLYPISLVLLAFVTLMGIITGDRVNGAARWMTFMGLQFQPSELAKMAVIIAVS 130

Query: 141 GYLVRKHDEVRQTFFGGFLKPIMVFGTLAVLLLGQPDLGTVIVMLVTLFGMLFIAGAKLS 200
             L ++ DE          K IM+   L +LL+   +L T +++   +F M+FI G   +
Sbjct: 131 FILSKRQDEEGAN--PKAFKYIMILTGLVLLLIAPENLSTAMLLFGVVFMMMFI-GRVAA 187

Query: 201 QFLALMVAGVLAVVAL----IVAEPYRV--------------RRVTSFLDPWEDP----- 237
           + L L+  G++ +VAL    +VA P +                R+  F D  E P     
Sbjct: 188 KKLLLLAGGLVLIVALGVGTVVAIPAKTLHNTPGLHRLETWQNRIKGFFDKDEVPAAKFD 247

Query: 238 FGSGYQLTQSLMAFGRGEWFGQGLGNSIQKLEYLPEAHTDFVFAVLAEELGFIGVVLVLV 297
                Q+  + +A       G+G GNSIQ+ ++L +A +DF+FA++ EE+G IG + V+ 
Sbjct: 248 IDKDAQIAHARIAIATSHVVGKGPGNSIQR-DFLSQAFSDFIFAIVIEEMGLIGGIFVVF 306

Query: 298 LIFSLVLKAIFIGKKAFQHDQQFGGYLAFGIGIWFAFQTLVNVGAAAGMVPTKGLTLPLI 357
           L   L+++A   G+ A + ++ F  +L  GI +    Q ++N+  A G+ P  G  LPL+
Sbjct: 307 LYLCLLMRA---GRIAQKCERTFPAFLVMGIALLLVSQAILNMMVAVGLFPVTGQPLPLV 363

Query: 358 SYGGSSLIIMSVAVSILLRI 377
           S GG+S +I    + ++L +
Sbjct: 364 SKGGTSTLINCAYIGMILSV 383