Pairwise Alignments

Query, 486 a.a., UDP-N-acetylmuramate--L-alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (379), Expect = 9e-41
 Identities = 107/392 (27%), Positives = 191/392 (48%), Gaps = 23/392 (5%)

Query: 25  IHFIGIGGAGMSGIAEVLLNEGYQISGSDLAANA---VTDRLADKGATIFIGHEAHNVAH 81
           +H +GI G  M G+A +   +G++++GSD  AN    ++ +L ++G  +  G +   +  
Sbjct: 3   VHILGICGTFMGGLALLARAKGHRVTGSD--ANVYPPMSTQLEEQGIELIQGFDPSQLGD 60

Query: 82  AS----VVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAE-LMRFRHGIAVAGTHGKTTT 136
           A     +VV+  A++  NP ++A     IP     + L + ++  R  +AV+GTHGKT+T
Sbjct: 61  AGSYPDIVVIGNAMSRGNPCVEAVLNLGIPYTSGPQFLVDHILPERWVLAVSGTHGKTST 120

Query: 137 TALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRILIAEADESDAS-------FLHLQ 189
           ++++  I  + G  P F+ GG+ ++ G +ARLG S   + EADE D++       F+H  
Sbjct: 121 SSMLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEADEYDSAFFDKRSKFVHYH 180

Query: 190 PMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVSRQ 249
           P   ++ N+E DH D +  D   +++ F   +  +P  G+ I   D   +++ I      
Sbjct: 181 PRTLVINNLEFDHADIF-ADLAAIQKQFHHQIRTVPGQGKVIWPADSHAVKQTIDMGCWS 239

Query: 250 VITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATE 309
                 S +          +    +F V   G++   +   + G+HN  NA  AIA A  
Sbjct: 240 EQETYHSSEVTKGWHAKALSDDCHEFEVFFDGQSQGVLDWALIGQHNIENAVMAIAAARH 299

Query: 310 DDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWA 369
             +   A + A+A      RR + L   +T NGV+ + DD+ HHPT +  TIK  R    
Sbjct: 300 VGVAPSAAIDALARFVPPKRRLELL---DTVNGVS-VYDDFAHHPTAIATTIKGMRAKVG 355

Query: 370 EKRLVMIFQPHRYTRTRDLY-DDFANVLEQVD 400
           + ++ ++ +P   T    ++ D  A+ + Q D
Sbjct: 356 QTKITIVLEPRSNTMKSGVHKDTLAHSMLQAD 387