Pairwise Alignments

Query, 903 a.a., protein translocase subunit SecA from Vibrio cholerae E7946 ATCC 55056

Subject, 948 a.a., preprotein translocase subunit SecA from Synechococcus elongatus PCC 7942

 Score =  540 bits (1391), Expect = e-157
 Identities = 295/525 (56%), Positives = 371/525 (70%), Gaps = 20/525 (3%)

Query: 5   LLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIE--------Q 56
           +L  ++G  N R +++ + +V EIN  E   E LSD++L AKT EFRQ+++        +
Sbjct: 1   MLNLLLGDPNVRKVKKYKPLVTEINLLEEDIEPLSDKDLIAKTAEFRQKLDKVSHSPAAE 60

Query: 57  GENLDQLLPEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAA 116
            E L +LLPEAFA +REASKRV G+RHFDVQ+IGGM+LH GQIAEM+TGEGKTL ATL +
Sbjct: 61  KELLAELLPEAFAVMREASKRVLGLRHFDVQMIGGMILHDGQIAEMKTGEGKTLVATLPS 120

Query: 117 YLNALPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILY 176
           YLNAL GKG H+VTVNDYLA+RDAE    +  FLG++VG+    M    ++  Y  DI Y
Sbjct: 121 YLNALSGKGAHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQGMSPEERRRNYNCDITY 180

Query: 177 GTNNEFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLY 236
            TN+E GFDYLRDNMA   E+ VQR   +AV+DEVDSILIDEARTPLIISG  +  S+ Y
Sbjct: 181 ATNSELGFDYLRDNMAAVIEEVVQRPFNYAVIDEVDSILIDEARTPLIISGQVDRPSEKY 240

Query: 237 IRINKLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGD 296
           +R +++  LLQ+    DSEE   DG + VDEK + V LT+ G    E+LL  + +    D
Sbjct: 241 MRASEVAALLQRSTNTDSEE-EPDGDYEVDEKGRNVLLTDQGFINAEQLLGVSDLFDSND 299

Query: 297 TLYSPANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQ 356
                      H++  A++A  LF K+V+YIV   GE+VIVDE TGR MPGRRWSDGLHQ
Sbjct: 300 --------PWAHYIFNAIKAKELFIKDVNYIVR-GGEIVIVDEFTGRVMPGRRWSDGLHQ 350

Query: 357 AVEAKEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTN 416
           AVE+KEGV+IQ E QTLASIT+QN+F LY KLSGMTGTA TE  EF++ Y LE  V+PTN
Sbjct: 351 AVESKEGVEIQPETQTLASITYQNFFLLYPKLSGMTGTAKTEELEFEKTYKLEVTVVPTN 410

Query: 417 KPMVRNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIK 476
           +   R D PDVVY++E  K+ AI  D  +   +G+PVLVGT S+EKSE LS  L + GI 
Sbjct: 411 RVSRRRDQPDVVYKTEIGKWRAIAADCAELHAEGRPVLVGTTSVEKSEFLSQLLNEQGIP 470

Query: 477 HNVLNAKFH--EKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGS 519
           HN+LNAK    E+EAEIVA+AG+ GAVTI+TNMAGRGTDI+LGG+
Sbjct: 471 HNLLNAKPENVEREAEIVAQAGRRGAVTISTNMAGRGTDIILGGN 515



 Score =  239 bits (609), Expect = 8e-67
 Identities = 129/304 (42%), Positives = 197/304 (64%), Gaps = 6/304 (1%)

Query: 524 VEKLDNPTQEQIDAIKAEWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAG 583
           ++KL    Q+     +A  KQ   +V++ GGLH+IGTERHESRR+DNQLRGR+GRQGD G
Sbjct: 628 IQKLREAYQQVRKEYEAVTKQEQAEVVELGGLHVIGTERHESRRVDNQLRGRAGRQGDPG 687

Query: 584 SSRFYLSMEDTLLRIFTSDRMAALIQS-GMDEGEAIESKMLSRSIEKAQRKVEGRNFDIR 642
           S+RF+LS+ED LLRIF  DR+A L+ +  ++E   IES ML+RS+E AQ+KVE   +DIR
Sbjct: 688 STRFFLSLEDNLLRIFGGDRVAKLMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIR 747

Query: 643 KQLLEYDDVANDQRKVVYELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWD 702
           KQ+ EYD+V N+QR+ +Y  R  ++   ++ + + Q  E  ++ ++D +I      + WD
Sbjct: 748 KQVFEYDEVMNNQRRAIYAERRRVLEGRELKEQVIQYGERTMDEIVDAHINVDLPSEEWD 807

Query: 703 IKGLEDRLKNDFDLPLPIQSWLDADNKLYEEALRERIIEQAVEVYKAKE---QAVSPAVM 759
           ++ L +++K    L   +++    D  L  EA++  + EQ    Y  KE     + P +M
Sbjct: 808 LEKLVNKVKQFVYLLEDLEAKQLED--LSPEAIKIFLHEQLRIAYDLKEAQIDQIQPGLM 865

Query: 760 RNFEKSVMLQTLDTLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLK 819
           R  E+  +LQ +DTLW+EHL AM+ LR+ + LRGY QK+P  EYK E +ELF +++ +++
Sbjct: 866 RQAERYFILQQIDTLWREHLQAMEALRESVGLRGYGQKDPLLEYKSEGYELFLEMMTAIR 925

Query: 820 SDVI 823
            +VI
Sbjct: 926 RNVI 929