Pairwise Alignments

Query, 903 a.a., protein translocase subunit SecA from Vibrio cholerae E7946 ATCC 55056

Subject, 896 a.a., preprotein translocase subunit SecA (RefSeq) from Rhodospirillum rubrum S1H

 Score =  894 bits (2309), Expect = 0.0
 Identities = 486/910 (53%), Positives = 622/910 (68%), Gaps = 27/910 (2%)

Query: 1   MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENL 60
           M   +  ++ GS NDR ++ L K V  IN  E   + LSD +L A+T   + R+ +GE L
Sbjct: 1   MFGAIARRLFGSANDRIVKSLVKTVAAINAKESEVQGLSDADLAARTPWLKSRLAEGETL 60

Query: 61  DQLLPEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNA 120
           D +L +AFATVREA+KR  G RH+DVQL+GG+VLHGG+IAEMRTGEGKTL ATL  YLNA
Sbjct: 61  DDILVDAFATVREAAKRTLGQRHYDVQLMGGLVLHGGKIAEMRTGEGKTLVATLPVYLNA 120

Query: 121 LPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILYGTNN 180
           L GKGVH+VTVNDYLAKRDAE    ++ FLG+TVGV I  +    ++ AY  D+ YGTNN
Sbjct: 121 LTGKGVHVVTVNDYLAKRDAEWMAKVYRFLGLTVGVIIHELDDGGRRAAYACDVTYGTNN 180

Query: 181 EFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN 240
           E GFD+LRDNM +R ED VQR   +A+VDEVDSILIDEARTPLIISG AEDSS LY  ++
Sbjct: 181 ELGFDFLRDNMKYRLEDMVQRPFAYAIVDEVDSILIDEARTPLIISGQAEDSSALYQAVD 240

Query: 241 KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYS 300
           KL+P L   D E             DEK++ V  TE G + +EELL + G++ EG+ LY 
Sbjct: 241 KLMPRLVPADYEK------------DEKARSVTYTEEGSDHIEELLREAGLLAEGN-LYE 287

Query: 301 PANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEA 360
             N++ LHH    LRAH LFE++V Y+V  D +VVI+DE TGR M GRR+SDGLHQA+EA
Sbjct: 288 TRNVTALHHATQGLRAHTLFERDVHYMVR-DDKVVIIDEFTGRAMEGRRFSDGLHQALEA 346

Query: 361 KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTNKPMV 420
           KEGV IQ ENQTLASITFQNYFR+Y KLSGMTGTA TEA EF +IYGL  V IPTN+PM+
Sbjct: 347 KEGVSIQPENQTLASITFQNYFRMYPKLSGMTGTALTEANEFMEIYGLAVVEIPTNRPMI 406

Query: 421 RNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALK-KAGIKHNV 479
           R D  D VYR+  EK+ AI + I +  ++GQPVLVGT SIEKSE L+  ++    +K  V
Sbjct: 407 RKDKDDEVYRTSREKYEAIAKQIAECQKRGQPVLVGTTSIEKSEYLAELMRTTTKVKPQV 466

Query: 480 LNAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKV--EKLDNPTQEQIDA 537
           LNA++HE+EA I+A+AG PGAVTIATNMAGRGTDI LGG+   ++  E   + T EQ  A
Sbjct: 467 LNARYHEQEAFIIAQAGVPGAVTIATNMAGRGTDIQLGGNLDMRMARELPADATPEQRAA 526

Query: 538 ----IKAEWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 593
               ++A+ ++   Q L AGGL++IGTERHESRRIDNQLRGR+GRQGD G S FYLS++D
Sbjct: 527 KEAELRADIEKKKAQALAAGGLYVIGTERHESRRIDNQLRGRTGRQGDPGGSSFYLSLDD 586

Query: 594 TLLRIFTSDRMAALIQS-GMDEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVA 652
            L+RIF S+RM ++++  G++EGEAI    +++++EKAQ+KVE RNFD RK LL++DDV 
Sbjct: 587 DLMRIFGSERMDSMLRKLGLEEGEAIVHPWVNKALEKAQQKVEARNFDTRKNLLKFDDVM 646

Query: 653 NDQRKVVYELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKN 712
           NDQRKVVYE R +LM   D+S+ +A  R++V+  ++  +IPP+++ + WD  GL + ++ 
Sbjct: 647 NDQRKVVYEQRRDLMVTTDVSETVADMRQEVIEDIVHAHIPPKAMPEEWDSAGLAEDVRR 706

Query: 713 DFDLPLPIQSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLD 772
            F L LPI  W   D    EE L ER+ +       AKE      VMR  EKS++LQ LD
Sbjct: 707 VFGLDLPIIDWASEDGIANEEIL-ERLTKDVEAKMAAKEAEYGADVMRMVEKSLLLQILD 765

Query: 773 TLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLKSDVITVLSKVRVQ 832
            +WKEHL  ++HLRQGI LR + Q++P  EYK ESFE+F+ +L  L+  V   L+ V+++
Sbjct: 766 GMWKEHLLHLEHLRQGISLRAFGQRDPLNEYKSESFEMFQTMLSDLRERVTMTLANVQLR 825

Query: 833 QQEEVERMEAQRRAQ--AEEAARHAQAQHASADDAEQDESNQPMVRDERKVGRNEPCPCG 890
                   E Q  A+    E A         A  A   E+  P      KV RNE CPCG
Sbjct: 826 MDPPPPPPEPQGFAEHVEPEPAIGGGGVPGVAPAATDREAGHP--ETWGKVARNELCPCG 883

Query: 891 SGKKYKQCHG 900
           SGKKYK CHG
Sbjct: 884 SGKKYKHCHG 893