Pairwise Alignments

Query, 903 a.a., protein translocase subunit SecA from Vibrio cholerae E7946 ATCC 55056

Subject, 907 a.a., preprotein translocase subunit SecA (RefSeq) from Shewanella loihica PV-4

 Score = 1281 bits (3316), Expect = 0.0
 Identities = 644/908 (70%), Positives = 762/908 (83%), Gaps = 6/908 (0%)

Query: 1   MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENL 60
           M  KLLTK+ GSRNDRTL+ L KIV +IN  E  FE  SDEELKAKT EF+QR+E G+ L
Sbjct: 1   MFGKLLTKIFGSRNDRTLKTLGKIVTKINALEADFEKFSDEELKAKTAEFKQRLESGQTL 60

Query: 61  DQLLPEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNA 120
           D ++PEAFA VREASKRVF MRHFDVQL+GGMVL   +IAEMRTGEGKTLTATL AYLNA
Sbjct: 61  DDVMPEAFAVVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA 120

Query: 121 LPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILYGTNN 180
           L GKGVH++TVNDYLA+RDAE NRPLFEFLGMTVGVNI  M Q  KK AY +DI YGTNN
Sbjct: 121 LTGKGVHVITVNDYLARRDAENNRPLFEFLGMTVGVNIAGMGQAEKKMAYASDITYGTNN 180

Query: 181 EFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN 240
           EFGFDYLRDNMAF P +RVQR   +A++DEVDSILIDEARTPLIISG AEDSS+LYI+IN
Sbjct: 181 EFGFDYLRDNMAFSPNERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKIN 240

Query: 241 KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYS 300
            LIP L +QDKED+EE  GDG +++DEK+KQVH+TE GQE VE LL + GM+ EGD+LYS
Sbjct: 241 TLIPHLIRQDKEDTEEEIGDGDYSIDEKAKQVHMTERGQEKVEVLLTERGMLAEGDSLYS 300

Query: 301 PANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEA 360
            ANISLLHHVNAALRAH LFEK+VDYIV  D EV+IVDEHTGRTMPGRRWS+GLHQAVEA
Sbjct: 301 AANISLLHHVNAALRAHTLFEKDVDYIV-QDNEVIIVDEHTGRTMPGRRWSEGLHQAVEA 359

Query: 361 KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTNKPMV 420
           KEGV IQNENQTLASITFQN+FR YEKL+GMTGTADTEAFEFQ IYGL+TVVIPTN+PMV
Sbjct: 360 KEGVHIQNENQTLASITFQNFFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIPTNRPMV 419

Query: 421 RNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL 480
           R D  D+VY +  EK+ AII+DI    ++GQPVLVGTVSIE+SELL + LKKA I H VL
Sbjct: 420 RKDHADLVYLTAEEKYDAIIKDIIDCRDRGQPVLVGTVSIEQSELLHSMLKKAKIPHEVL 479

Query: 481 NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKA 540
           NAKFHE+EAEIVA+AG+ GAVTIATNMAGRGTDIVLGG+W  +++ L+NPT EQ   IKA
Sbjct: 480 NAKFHEREAEIVAQAGRSGAVTIATNMAGRGTDIVLGGNWNMEIDALENPTAEQKAKIKA 539

Query: 541 EWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFT 600
           +W+  HD+V+ AGGLHI+GTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED+L+RIF 
Sbjct: 540 DWQVRHDEVVAAGGLHILGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFA 599

Query: 601 SDRMAALIQS-GMDEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVV 659
           S+R++++++  GM++GEAIE   +SR+IE AQRKVE RNFDIRKQLLE+DDVANDQR+VV
Sbjct: 600 SERVSSMMKKLGMEKGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVV 659

Query: 660 YELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLP 719
           Y  R+ELM A+ I D I   + DV+N ++D+YIPPQS+E++WDI GLE RL+ ++ L +P
Sbjct: 660 YAQRNELMDAESIQDTIVNIQADVVNGLIDQYIPPQSVEELWDIAGLETRLEQEYALRMP 719

Query: 720 IQSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLDTLWKEHL 779
           +Q WLD ++ L+EE LRERI+E  V+ YKAKE+ V   V+R FEK+VMLQTLD LWKEHL
Sbjct: 720 VQEWLDKEDDLHEETLRERIVEIWVKAYKAKEEMVGAQVLRQFEKAVMLQTLDGLWKEHL 779

Query: 780 AAMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLKSDVITVLSKVRVQQQEEVER 839
           AAMDHLRQGIHLRGYAQKNPKQEYKRESFELF+ +LESLK DVI++LSKV+VQ Q +VE 
Sbjct: 780 AAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLESLKHDVISILSKVQVQAQSDVEE 839

Query: 840 MEAQRRAQAEEAAR---HAQAQH-ASADDAEQDESNQPMVRDERKVGRNEPCPCGSGKKY 895
           ME +RR +  +  R   HA+A+    A++A+   + QP+VR+  KVGRN+PCPCGSG+KY
Sbjct: 840 MEERRRQEEAKVRRDYQHAEAEALVGAEEAQALAATQPVVREGEKVGRNDPCPCGSGRKY 899

Query: 896 KQCHGQIN 903
           KQCHG+++
Sbjct: 900 KQCHGKLS 907