Pairwise Alignments

Query, 903 a.a., protein translocase subunit SecA from Vibrio cholerae E7946 ATCC 55056

Subject, 908 a.a., preprotein translocase, SecA subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1291 bits (3342), Expect = 0.0
 Identities = 647/911 (71%), Positives = 767/911 (84%), Gaps = 11/911 (1%)

Query: 1   MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENL 60
           M  KLLTKV GSRNDRTL+ L+K+V +IN  E  +E L+DE+LKAKT EFR+R+  G +L
Sbjct: 1   MFGKLLTKVFGSRNDRTLKGLQKVVNKINALEADYEKLTDEQLKAKTAEFRERLAAGASL 60

Query: 61  DQLLPEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNA 120
           D ++ EAFATVREASKRVF MRHFDVQL+GGMVL   +IAEMRTGEGKTLTATL AYLNA
Sbjct: 61  DSIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA 120

Query: 121 LPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILYGTNN 180
           L GKGVH++TVNDYLA+RDAE NRPLFEFLG+TVG+N+  + Q  KK+AY ADI YGTNN
Sbjct: 121 LTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQDKKDAYNADITYGTNN 180

Query: 181 EFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN 240
           EFGFDYLRDNMAF P++RVQR   +A++DEVDSILIDEARTPLIISG AEDSS+LYI+IN
Sbjct: 181 EFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKIN 240

Query: 241 KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYS 300
            LIP L +QDKEDSEEY G+G +T+DEK+KQVH TE GQE VE LL++ GM+ EGD+LYS
Sbjct: 241 TLIPNLIRQDKEDSEEYVGEGDYTIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300

Query: 301 PANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEA 360
            ANISLLHHVNAALRAH LFE++VDYIV  DGEV+IVDEHTGRTMPGRRWS+GLHQAVEA
Sbjct: 301 AANISLLHHVNAALRAHTLFERDVDYIV-QDGEVIIVDEHTGRTMPGRRWSEGLHQAVEA 359

Query: 361 KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTNKPMV 420
           KEGV+IQNENQTLASITFQNYFRLYEKL+GMTGTADTEAFEFQ IYGL+TVV+PTN+PMV
Sbjct: 360 KEGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMV 419

Query: 421 RNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL 480
           R DM D+VY +  EK+ AII+DIK   E+GQPVLVGTVSIE+SELL+  + K  I H VL
Sbjct: 420 RKDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHQVL 479

Query: 481 NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKA 540
           NAKFHEKEAEIVA+AG+ GAVTIATNMAGRGTDIVLGG+W  +++ L+NPT EQ   IKA
Sbjct: 480 NAKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALENPTPEQKAKIKA 539

Query: 541 EWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFT 600
           +W+  HD V+ AGGLHI+GTERHESRRIDNQLRGR+GRQGDAGSSRFYLSMED+L+RIF 
Sbjct: 540 DWQLRHDAVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFA 599

Query: 601 SDRMAALIQS-GMDEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVV 659
           SDR++ +++  GM+EGEAIE   +SR+IE AQRKVE RNFDIRKQLLE+DDVANDQR+VV
Sbjct: 600 SDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVV 659

Query: 660 YELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLP 719
           Y  R+ELM A+ I+D I   ++DV++AV+D+YIPPQS+E++WD+ GLE RL  +F L LP
Sbjct: 660 YAQRNELMDAESIADTIQNIQDDVISAVIDQYIPPQSVEELWDVPGLEQRLHQEFMLKLP 719

Query: 720 IQSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLDTLWKEHL 779
           IQ WLD ++ L+EE+LRERII    + YKAKE+ V  +V+R FEK+VMLQTLD LWKEHL
Sbjct: 720 IQEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVMLQTLDGLWKEHL 779

Query: 780 AAMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLKSDVITVLSKVRVQQQEEVER 839
           AAMDHLRQGIHLRGYAQKNPKQEYKRESFELF+ LL +LK DVI+VLSKV+VQ Q +VE 
Sbjct: 780 AAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLNTLKHDVISVLSKVQVQAQSDVEE 839

Query: 840 MEAQRRAQAEEAARHAQAQHASA-------DDAEQDESNQPMVRDERKVGRNEPCPCGSG 892
           MEA+RR   E+A      QHA+A       D+ +   ++ PM+RD  KVGRN+PCPCGSG
Sbjct: 840 MEARRR--EEDAKIQRDYQHAAAEALVGGSDEDDAIAAHTPMIRDGDKVGRNDPCPCGSG 897

Query: 893 KKYKQCHGQIN 903
           +KYKQCHG+++
Sbjct: 898 RKYKQCHGKLS 908