Pairwise Alignments

Query, 903 a.a., protein translocase subunit SecA from Vibrio cholerae E7946 ATCC 55056

Subject, 833 a.a., preprotein translocase, SecA subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  867 bits (2240), Expect = 0.0
 Identities = 488/910 (53%), Positives = 607/910 (66%), Gaps = 88/910 (9%)

Query: 1   MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENL 60
           M+  L  KV GS+NDR ++RLR IV  IN  EP  ++L DE+   +  E+RQ++E+G  L
Sbjct: 1   MLGFLFKKVFGSKNDRYIKRLRPIVAAINALEPQMQSLRDEDFPVRIAEYRQQVEEGRKL 60

Query: 61  DQLLPEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNA 120
           D +LPE FA VREA KRVF MRHFDVQL+GGM LH G+IAEM+TGEGKTL ATL   LNA
Sbjct: 61  DDMLPEVFALVREAGKRVFNMRHFDVQLVGGMALHHGKIAEMKTGEGKTLVATLPVVLNA 120

Query: 121 LPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILYGTNN 180
           L GKGVH+VTVNDYLAKRDA     L+ FLG++VGV +  +    +K AY ADI YGTNN
Sbjct: 121 LTGKGVHVVTVNDYLAKRDAAWMGQLYNFLGLSVGVIVHGLDDEQRKAAYGADITYGTNN 180

Query: 181 EFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN 240
           EFGFDYLRDNM F  E  VQR   FA+VDEVDSILIDEARTPLIISG +E+S+ LY  ++
Sbjct: 181 EFGFDYLRDNMKFYAEQLVQRGHNFAIVDEVDSILIDEARTPLIISGASEESTGLYRHMD 240

Query: 241 KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYS 300
           +++  L +           D HFTVDEK++   LT+ G  F E+L+   G+    D LY 
Sbjct: 241 EIVRKLTR-----------DTHFTVDEKARTAMLTDEGVAFCEKLV---GI----DNLYD 282

Query: 301 PANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEA 360
           P NI+  HH+  AL+AH LF ++VDYIV  +G+VVIVDE TGR MPGRR+SDGLHQA+EA
Sbjct: 283 PGNITTQHHLMQALKAHNLFRRDVDYIVK-EGQVVIVDEFTGRLMPGRRFSDGLHQALEA 341

Query: 361 KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTNKPMV 420
           KE VKI+ ENQTLASITFQNYFR+Y KL+GMTGTADTEA EF QIY LE V IPTNKPM 
Sbjct: 342 KEAVKIEAENQTLASITFQNYFRMYAKLAGMTGTADTEAVEFHQIYSLEVVSIPTNKPMQ 401

Query: 421 RNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL 480
           R D  D +YR++ EK+ AI + I +  + GQPVLVGT+SIE SELLS  LKK G+ H+VL
Sbjct: 402 RKDFADAIYRTKREKYDAIAQAIAELHKAGQPVLVGTISIETSELLSTMLKKTGVPHSVL 461

Query: 481 NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKA 540
           NAK HEKEAEIVA AG+ G VTIATNMAGRGTDIVLG                       
Sbjct: 462 NAKHHEKEAEIVALAGQRGHVTIATNMAGRGTDIVLG----------------------- 498

Query: 541 EWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFT 600
                 + V + GGLHI+GTERHESRRIDNQLRGRSGRQGD GSSRFYLS+ED L+R+F 
Sbjct: 499 ------EGVRELGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRLFG 552

Query: 601 SDRMAALIQS-GMDEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVV 659
           S+R++ L++  GM+EGE IE++M+SR+IE AQ++VEG NF+IRK LL+YD+V N QR+V+
Sbjct: 553 SERISGLMEKLGMEEGEPIEARMVSRAIENAQKRVEGHNFEIRKTLLDYDNVMNQQREVI 612

Query: 660 YELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLE--DMWDIKGLEDRLKNDFDL- 716
           Y LR + MSA D+   + +  +DVL    D Y P +  E      +  +  RL +  ++ 
Sbjct: 613 YTLRRDAMSAPDLGPTMEEFLDDVLE---DVYAPAEGGEAPSADTVAAVWGRLADVCNIT 669

Query: 717 ----PLPIQSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLD 772
               P P     D         L E + E   E Y            R+  +  ML+ LD
Sbjct: 670 RVMQPAPALPTRDEARAAVLSILHE-LREDTGESY------------RDIIRYFMLEELD 716

Query: 773 TLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLKSDVITVLSKVRVQ 832
             WKEHL  MDHLR GI LRGY Q++PK EYKRE F +F+++L  +K  V   L+++RVQ
Sbjct: 717 RCWKEHLRNMDHLRDGIGLRGYGQRDPKLEYKREGFAMFQEMLFRIKEGVFRSLTRLRVQ 776

Query: 833 QQEEVERMEAQRRAQAEEAARHAQAQHASADDAEQDESN--QPMVRDERKVGRNEPCPCG 890
           + E             EEA RH +   A A    + E+   QP  R++ KVGRN+ CPCG
Sbjct: 777 RVE-------------EEAFRHKEQPAAVAYSGGEAEAGPAQPH-REDPKVGRNDLCPCG 822

Query: 891 SGKKYKQCHG 900
           SG+KYK+C G
Sbjct: 823 SGRKYKKCCG 832