Pairwise Alignments

Query, 379 a.a., carbamoyl-phosphate synthase small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., carbamoyl phosphate synthase small subunit from Synechococcus elongatus PCC 7942

 Score =  345 bits (886), Expect = e-100
 Identities = 189/377 (50%), Positives = 239/377 (63%), Gaps = 14/377 (3%)

Query: 3   KSALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGN 62
           ++ALLVL DG+VF G + GA G  +GEVVFNT MTGYQE+LTDPSY  QIV+ TYP +GN
Sbjct: 17  QAALLVLADGSVFHGYACGAAGTVIGEVVFNTGMTGYQEVLTDPSYCGQIVSFTYPELGN 76

Query: 63  TGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRIL 122
           TG N EDEES      GL+ R++    SN+R+++SL DYL+  NIVGI  IDTR LT+ L
Sbjct: 77  TGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHL 136

Query: 123 REKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAYAWK---QGSWT-LE 178
           R  GA NG I +   LD     A+ K  P ++G++L   V+T   Y W+     +W  +E
Sbjct: 137 RSTGAMNGGI-STTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQTWEFIE 195

Query: 179 GGLPEAKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFL 238
           G   E+         VVA DFG KRNILR L   GCR+ VVPA T  E++L   PDGVFL
Sbjct: 196 GPTTESLT-------VVAIDFGVKRNILRRLASYGCRVIVVPADTPIEEILRHEPDGVFL 248

Query: 239 SNGPGDPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASGAKTVKMKFGHHGANHPVK 298
           SNGPGDP      I   +  L+  +P+FGICLGHQIL LA GA+T K+KFGH G NHP  
Sbjct: 249 SNGPGDPATVKNGISTAQALLQTGLPLFGICLGHQILGLALGAQTFKLKFGHRGLNHPCG 308

Query: 299 DLDRGVVMITSQNHGFAADEATLPDNLRATHKSLFDGSLQGIHRTDKPAFSFQGHPEASP 358
              +  V ITSQNHGFA    +L  ++  TH +L D ++ G+     P FS Q HPEASP
Sbjct: 309 LSQQ--VEITSQNHGFAIAADSLGPDVEVTHLNLNDRTVAGLRHRHLPVFSVQYHPEASP 366

Query: 359 GPHDAAPLFDHFIELIK 375
           GPHD+  LF+ F+ L++
Sbjct: 367 GPHDSDYLFEQFVALMR 383