Pairwise Alignments

Query, 379 a.a., carbamoyl-phosphate synthase small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., carbamoyl phosphate synthase small subunit (RefSeq) from Shewanella loihica PV-4

 Score =  619 bits (1597), Expect = 0.0
 Identities = 301/378 (79%), Positives = 339/378 (89%), Gaps = 1/378 (0%)

Query: 1   MSKSALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHI 60
           ++KSALLVLEDGTVF G +IGADG++VGEVVFNTSMTGYQEILTDPSYS+QIVTLTYPHI
Sbjct: 10  LTKSALLVLEDGTVFSGTAIGADGLAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 69

Query: 61  GNTGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTR 120
           GNTGTNSED ES A+HA GL+IRDLPL+ASNFR+EQSLSDYLKS N+VGIADIDTRKLTR
Sbjct: 70  GNTGTNSEDTESEAVHACGLIIRDLPLLASNFRNEQSLSDYLKSNNVVGIADIDTRKLTR 129

Query: 121 ILREKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAYAWKQGSWTLEGG 180
           ILREKGAQ G I+ GD +DEA ALA AK FPGLKGMDLAK V+T++ Y W+ GSW L GG
Sbjct: 130 ILREKGAQAGAILVGD-MDEAKALAAAKAFPGLKGMDLAKEVTTQKQYQWRSGSWRLVGG 188

Query: 181 LPEAKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFLSN 240
           LP    +SEL Y VVAYD+G KRNILRMLVDRGC +TVVPAQT A +VLA+NPDG+FLSN
Sbjct: 189 LPSDTPESELKYKVVAYDYGVKRNILRMLVDRGCDVTVVPAQTPAAEVLAMNPDGIFLSN 248

Query: 241 GPGDPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASGAKTVKMKFGHHGANHPVKDL 300
           GPGDPEPC YAIEA + FL+ +IP+FGICLGHQ+LALASGAKT+KMKFGHHGANHPV +L
Sbjct: 249 GPGDPEPCDYAIEAIQAFLKTDIPLFGICLGHQLLALASGAKTLKMKFGHHGANHPVSNL 308

Query: 301 DRGVVMITSQNHGFAADEATLPDNLRATHKSLFDGSLQGIHRTDKPAFSFQGHPEASPGP 360
           ++G VMITSQNHGFAADE +LP N++ THKSLFDGSLQGIH TDKPAFSFQGHPEASPGP
Sbjct: 309 EKGNVMITSQNHGFAADETSLPANVKVTHKSLFDGSLQGIHLTDKPAFSFQGHPEASPGP 368

Query: 361 HDAAPLFDHFIELIKQFR 378
           HDAAPLFDHFIELI+++R
Sbjct: 369 HDAAPLFDHFIELIEEYR 386