Pairwise Alignments

Query, 379 a.a., carbamoyl-phosphate synthase small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis JJ

 Score =  293 bits (751), Expect = 4e-84
 Identities = 162/377 (42%), Positives = 221/377 (58%), Gaps = 33/377 (8%)

Query: 6   LLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNTGT 65
           +LVLEDGT+ RG   GA+   +GE+VFNTSMTGY EILTDPSY  QI+T+TYP  GN G 
Sbjct: 4   ILVLEDGTIIRGEGFGAESEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGV 63

Query: 66  NSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREK 125
             E  ES  I A+G V++D+        + + L ++LK  NI GI+ +DTR +TR +R K
Sbjct: 64  EKEWFESDGIKAEGFVVKDI--------TGKELDEFLKEYNIPGISGVDTRYITRKIRSK 115

Query: 126 GAQNGCIMAGDNL----DEALALAKAKEFPGLKGMDLAKVVSTKEAYAWKQGSWTLEGGL 181
           G     +    N     +E   + K  ++P +  +DL   VSTKE         T+E   
Sbjct: 116 GVIRSLLKTSTNPISKDEETELIKKVVDYPDISEIDLVPEVSTKE---------TVEYSA 166

Query: 182 PEAKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFLSNG 241
            + K         V  D G K++I+  LV+RGC +  VP  +  E++++ NPD V +SNG
Sbjct: 167 EDEKT------RCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKEEEIISYNPDFVLVSNG 220

Query: 242 PGDPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASGAKTVKMKFGHHGANHPVKDLD 301
           PGDPE  T  ++  +  +   +PV GICLGHQI+ +A G KT K+KFGH G N PVKD++
Sbjct: 221 PGDPENMTETVDTVKNLI-GTLPVTGICLGHQIITIALGGKTYKLKFGHRGGNQPVKDVE 279

Query: 302 RGVVMITSQNHGFAADEATLPDNLRATHKSLFDGSLQGIHRTD-----KPAFSFQGHPEA 356
            G V ITSQNHGFA D+  +P      H +L D +++GI + +        +S Q HPEA
Sbjct: 280 SGKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKIESSDLKNTVWSVQYHPEA 339

Query: 357 SPGPHDAAPLFDHFIEL 373
            PGPHDA  LFD  +EL
Sbjct: 340 GPGPHDARFLFDEMVEL 356