Pairwise Alignments

Query, 379 a.a., carbamoyl-phosphate synthase small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., carbamoyl-phosphate synthase, small subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  609 bits (1570), Expect = e-179
 Identities = 295/378 (78%), Positives = 335/378 (88%)

Query: 1   MSKSALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHI 60
           ++KSALLVLEDGTVF G +IGADG+SVGEVVFNTSMTGYQEILTDPSYS+QIVTLTYPHI
Sbjct: 5   LTKSALLVLEDGTVFTGTAIGADGLSVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 64

Query: 61  GNTGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTR 120
           GNTGTN+ED ES  +HA GL+IRDLPLIAS+FR++Q+LSDYLK+ N+VGIADIDTRKLTR
Sbjct: 65  GNTGTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTR 124

Query: 121 ILREKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAYAWKQGSWTLEGG 180
           ILREKGAQ GCIMAG +LDE  ALA AK FPGLKGMDLAK V+T +AY W++GSW L GG
Sbjct: 125 ILREKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVTTDKAYPWRKGSWRLVGG 184

Query: 181 LPEAKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFLSN 240
           LP       L Y VVAYD+G K+NILRMLVDRGC +TVVPA+T A +VLA+NPDGVFLSN
Sbjct: 185 LPADTPAEALKYKVVAYDYGVKQNILRMLVDRGCDVTVVPAKTPASEVLAMNPDGVFLSN 244

Query: 241 GPGDPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASGAKTVKMKFGHHGANHPVKDL 300
           GPGDPEPC YAIEA +  L+ + P+FGICLGHQ+LALASGAKT+KMKFGHHGANHPV ++
Sbjct: 245 GPGDPEPCDYAIEAIQQILKTDTPIFGICLGHQLLALASGAKTLKMKFGHHGANHPVSNI 304

Query: 301 DRGVVMITSQNHGFAADEATLPDNLRATHKSLFDGSLQGIHRTDKPAFSFQGHPEASPGP 360
           ++G VMITSQNHGFAADEATLP N++ THKSLFDGSLQGIH TDKPAFSFQGHPEASPGP
Sbjct: 305 EKGNVMITSQNHGFAADEATLPANIKVTHKSLFDGSLQGIHLTDKPAFSFQGHPEASPGP 364

Query: 361 HDAAPLFDHFIELIKQFR 378
           +DAAPLFDHFIELI+ +R
Sbjct: 365 NDAAPLFDHFIELIEHYR 382