Pairwise Alignments

Query, 379 a.a., carbamoyl-phosphate synthase small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., carbamoyl-phosphate synthase, small subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  305 bits (782), Expect = 1e-87
 Identities = 171/376 (45%), Positives = 223/376 (59%), Gaps = 11/376 (2%)

Query: 5   ALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNTG 64
           ALL LEDG V  G S    G + GE +FNT MTGYQE+LTDPSY+ Q+V +TYP +GN G
Sbjct: 3   ALLALEDGFVLEGRSFTGPGETGGEAIFNTGMTGYQEVLTDPSYAGQMVCMTYPLVGNYG 62

Query: 65  TNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILRE 124
              ED ES  +H +  ++++   + SN+RSE SL DYLK   ++GI  IDTR LTR LR 
Sbjct: 63  VTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRI 122

Query: 125 KGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAYAW---KQGSWTLE-GG 180
            GA  G +++    D A  + +A+  P ++G +L   V+    Y W   +  + TLE GG
Sbjct: 123 HGAMRG-VISTQETDPARLVERARALPSMEGQNLVTRVAPAAPYRWDGERPQAVTLEPGG 181

Query: 181 LPEAKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFLSN 240
                    L    V YDFG K NILR+L  +G  + VVP    A DV A+    VFLSN
Sbjct: 182 CAWVGKGPRL----VVYDFGIKWNILRLLAQQGFDMLVVPPSFKAADVAAVGAQAVFLSN 237

Query: 241 GPGDPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASGAKTVKMKFGHHGANHPVKDL 300
           GPGDP      I A    L +  P  GICLGHQ+L  A G +T+K+KFGHHG NHPVKDL
Sbjct: 238 GPGDPATLKDEI-AEIAKLAQTYPTAGICLGHQLLGHALGGRTMKLKFGHHGCNHPVKDL 296

Query: 301 DRGVVMITSQNHGFAADEATLPDNLRATHKSLFDGSLQGIHRTDKPAFSFQGHPEASPGP 360
             G + I+SQNHGF  D  +L D +  TH +L DG+L+G     KP  + Q HPEASPGP
Sbjct: 297 TTGRIEISSQNHGFCVDIDSLTD-VEITHVNLNDGTLEGFAHKTKPVIAVQHHPEASPGP 355

Query: 361 HDAAPLFDHFIELIKQ 376
           +D+   F  F  ++++
Sbjct: 356 NDSRYFFARFRNMVRE 371