Pairwise Alignments

Query, 540 a.a., recombinase RecF from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  117 bits (294), Expect = 7e-31
 Identities = 95/451 (21%), Positives = 205/451 (45%), Gaps = 49/451 (10%)

Query: 62  IRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESISKCLQFLSDNIRIQNN 121
           +RL  +SL +++ F+  +  +     T+++  NGSGK+ +L++    L    + I     
Sbjct: 4   LRLDKLSLTNFRCFAHCEI-AFHPGLTVLVAENGSGKTAVLDAARAALSVFVNAI-YPPE 61

Query: 122 NNYKFQDSEINIHSISGQTIVRCI-LEIENDFSFSCSLTKNRENISRKVSSELEEFKALA 180
            + + + S++ +     + +  C+  E E   +        + +I         +F+ L 
Sbjct: 62  KSLRIERSDVRLIPGQERRMSPCLPTEYEAQATVQGEAVTWKSSIRTYGDKVRPDFRHLG 121

Query: 181 RMYQRSNELDNNTLSYPLLAYYPVERSVTLKRDDAVKYYERKKAKYSDKSEGLKNAFDGT 240
            M   +    ++    PL+AYY  +R  + +R    +Y         ++  G  +    +
Sbjct: 122 LMKAAAQPFLSDMTVLPLIAYYGTDRLWSERRQ--TEYRRSSLTNVGERVAGYADCLTSS 179

Query: 241 SNFNDFFSWYKEIDDIINEFKANDSIT-KEEIEYLLSKTDNKEKIGSLISQLLEKKNNYN 299
           S+F    +W++      + F+   S + +E ++  L+  +  ++                
Sbjct: 180 SSFKGVSAWFE------HRFRQTASPSFRESLQTNLAMIEGLKRA--------------- 218

Query: 300 NNEDREFLIRQQKVIQESIKTFVSDIDQVKISRTPHLDMTVIKNGSEISIFNLSQGEKTL 359
                        V+  +  + +   D++      H      +   E+ +  LS G +T+
Sbjct: 219 ----------TDTVLHPTGWSSLRWDDELHTLTAKH------EERGELPLSLLSDGVRTM 262

Query: 360 IALVSDIARRLVILNPSLEN--PLNGYGIVLIDEIDLHLHPKWQQTIVQKLENTFPNIQF 417
           +ALV+D+ARR   LNP L +   +   G++++DE+D+HLHP+WQQ ++  L++ FP +Q 
Sbjct: 263 LALVADVARRCASLNPQLSDRAAIGTPGVLIVDEVDMHLHPRWQQQVLGLLQSAFPALQI 322

Query: 418 ILSTHSPLVLTTVTSEQIKIINELDYRFKLLSPTSNPFGKNASDALA-IMETSESPLVHS 476
           I+STHSP VL+TV    I++++  +    + +P     G  ++D LA +M+    P +  
Sbjct: 323 IVSTHSPHVLSTVDKSSIRVLHVGNGDVVIETPLIQTKGVESADVLATVMDVDPVPQLAE 382

Query: 477 EEILALIKKYESLVKRGQEDCRKTKEIKKRI 507
              L+    Y  L++ G+ + ++  ++++R+
Sbjct: 383 SSALS---AYRKLIEAGKAEGQEASDLRQRL 410