Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score = 73.9 bits (180), Expect = 6e-18
 Identities = 78/315 (24%), Positives = 130/315 (41%), Gaps = 50/315 (15%)

Query: 37  GSHAYKVYSIPKRKAGR----RTIAHPSSKLKICQRHLNAILNPLLKVHDSSYAYVKGRS 92
           G   Y+ + I KR        R I+ PS  L   QR +N  +    +V D+S A+ K   
Sbjct: 67  GPEPYRSFRIRKRTEKSSERYRHISVPSHALMCVQRWINQRILQQCQVDDASTAFAKDSK 126

Query: 93  IKDNALVHSHSAYVLKMDFQNFFNSITP-TILR-------QCLIQNDI--LLSVNELEKL 142
           + + A +H  S +++K+D +NFF+SI   +I R       Q L+  ++  L +       
Sbjct: 127 LIEAATIHCKSRWLVKIDVRNFFDSINEISIYRVFNSLGYQPLVAFELARLCTRKSARHS 186

Query: 143 EQLIFWNPSKKR-------NGKL----------------ILSVGSPISPLISNAIMYPFD 179
           +  + + P  +         GK                  L  G+P SP++SN  M  FD
Sbjct: 187 KNWLNFRPETRDVWAAPDDEGKAWSSDMVIKSYDALHQGYLPQGAPTSPMLSNLAMRSFD 246

Query: 180 KIINDICTKHGINYTRYADDITFSTNIKNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFS 239
           + + D+  K G  YTRYADDI+ ST   ++     E++  +    +   +  N  KT   
Sbjct: 247 EKVRDLALKRGFFYTRYADDISLSTERTSSRVTCVELIRDVHQLLHEEGLSPNFAKTKIV 306

Query: 240 SKKHNRHVTGITLTNDSKISIGRSRKRYISSLVFKYINKNLDIDEI------------NH 287
                + V G+ L N  K  + R  +  +   +      N  ++              +H
Sbjct: 307 PPGAKKIVLGL-LVNGEKPRLTREFRLRLRQHLHFLEKPNGPVEHAAKRKFASVSGLRHH 365

Query: 288 MKGMLAFAYNIEPIY 302
           + G+ A+A  IEP Y
Sbjct: 366 LLGLAAYAAQIEPEY 380