Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., reverse transcriptasematurase from Sinorhizobium meliloti 1021

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 25/209 (11%)

Query: 45  SIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLL--KVHDSSYAYVKGRSIKDNAL---- 98
           +IPK   G R +  P+   ++ Q+ L  +L PLL     + S+ +  GRS  D  L    
Sbjct: 108 TIPKPDGGERELGIPTVTDRLIQQALLQVLQPLLDPAFSEHSHGFRPGRSAHDAVLEAQS 167

Query: 99  -VHSHSAYVLKMDFQNFFNSITPTILRQCLIQNDILLSVNELEKLEQLIFWNPSKKRNGK 157
            V S    V+ +D + FF+ +   IL   L +    +S   + +L +  + N     +G 
Sbjct: 168 YVQSGRRIVVDVDLEKFFDRVNHDILIDRLSKR---ISDRRVIRLIR-AYLNSGIMDHGV 223

Query: 158 LILSV-----GSPISPLISNAIMYPFDKIINDICTKHGINYTRYADDITFSTNIKNTLNK 212
           +   V     G P+SPL++N ++   DK +     + G  + RYADD     N+     K
Sbjct: 224 VQERVMGTPQGGPLSPLLANVLLDEVDKELE----RRGHCFVRYADD----CNVYVGSRK 275

Query: 213 LPEIVEQLIIQTYAG-RIIINKRKTVFSS 240
             E V  L+ + Y    + IN+ K+  +S
Sbjct: 276 AGERVMALLRRLYGRLHLTINEGKSAVTS 304