Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 509 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 32/261 (12%)

Query: 30  FERLEVRGSHAYKVYSIPKRKAGRRTIAHPSSKLKICQRH-LNAILNPLLKVHDSSYAYV 88
           ++R   R +H Y  + IPK+  G+R I+ P S+LK  Q   L  +LN + +++D  + ++
Sbjct: 165 YQRKVSRINH-YHTFEIPKKTGGKRLISAPKSRLKALQLWVLENVLNRI-EINDHVHGFI 222

Query: 89  KGRSIKDNALVHSHSAYVLKMDFQNFFNSITPTILRQCLIQNDILLSVNELEKLEQLIFW 148
           K RSI  NA  H     V+ +D ++FF SI+   ++     N +  S  +L  +  LI  
Sbjct: 223 KERSIISNAQPHLEKDIVINVDLKDFFPSISYKRVKGLF--NKLGYS-EQLSTVFGLICT 279

Query: 149 NPSKK-----------RNGKLILSVGSPISPLISNAIMYPFDKIINDICTKHGINYTRYA 197
           +   +           + G  IL  GSP SP ISN I +  DK I+ + +K    YTRYA
Sbjct: 280 SAETEYVEMDGVSYYVQKGDRILPQGSPASPAISNLIAFKLDKKIHGLASKFNFTYTRYA 339

Query: 198 DDITFS------TNIKNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTGIT 251
           DD++FS       NI + L  L +I+E       A    ++  KT    K + + VTGI 
Sbjct: 340 DDLSFSLSKENEKNIASLLFFLKKIIE-------AEGFTMHPAKTHIMRKGNLQKVTGIV 392

Query: 252 LTNDSKISIGRSRKRYISSLV 272
           +  + K+++ R + R   +L+
Sbjct: 393 V--NEKLNVQRDQLRKFRALL 411