Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., RNA-directed DNA polymerase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 41/288 (14%)

Query: 31  ERLEVRGSHAYKVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLLKVHDSSYAYVKG 90
           E L+   SH Y+ + I KR+ G R I+ P  +LK  Q  +   +   + VH ++  + + 
Sbjct: 94  EILQDVSSH-YREFWIRKRRGGYRMISAPDKELKAIQDTIYHRILLSVNVHPAATGFRRQ 152

Query: 91  RSIKDNALVHSHSAYVLKMDFQNFFNSITPTILRQCLIQNDILLSVNELEKLEQLIFWNP 150
            SI DN   H    YVLK D  +FF SI                S    +  E++ +   
Sbjct: 153 HSIVDNVRPHLGKRYVLKTDIHDFFISIR---------------SPRVKKTFEKIGYPKN 197

Query: 151 SKKRNGKLI-----LSVGSPISPLISNAIMYPFDKIINDICTKHGINYTRYADDITFSTN 205
             K  G+L      L  G+  SP++SN I Y  D+ +  +  + G+ Y+RYADD+TFS +
Sbjct: 198 ISKVLGELCCMRRHLPQGASTSPVLSNIIAYEMDRKLAAMAEEFGLTYSRYADDLTFSGD 257

Query: 206 I---KNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTGITLTNDSKISIGR 262
           +      L ++ EI+ +   +        N +KT F ++   + +TG+++++  K++I +
Sbjct: 258 VFPKDQVLARVKEIIREEKFEP-------NHQKTRFLNEYDRKIITGVSVSSGVKLTIPK 310

Query: 263 SRKRYISSLVFKYINKNL----------DIDEINHMKGMLAFAYNIEP 300
           +RKR I   V+  + K L          D   +  + G L +  +IEP
Sbjct: 311 ARKREIRKNVYFILTKGLAEHQRRIGSHDPAYLKRLIGSLCYWRSIEP 358