Pairwise Alignments

Query, 261 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 18/248 (7%)

Query: 10  LLFLVAGV-AGFIDAMAGGGGLLTLPALLAAGVPPTQALATNKLQSSFGSFSATLYFVRK 68
           LL  +AG+  G ++A+AGGG  +TL AL+  GVPP  A AT       G + A+ +  RK
Sbjct: 4   LLIALAGLLGGMLNAVAGGGSFITLFALVFVGVPPLMANATGTAALLPG-YLASAWRFRK 62

Query: 69  GV-----VSLKAMRL-AIACTFVGAALGAEAVQYIDATLLTSLIPLLLLGISLYFLLAP- 121
            +     +SLK + L AIA  F+GAA+     + + A     L+P L+L  +L F+  P 
Sbjct: 63  EIEYPANLSLKTLCLIAIAGGFLGAAILLSTSEQVFA----YLVPWLILLATLAFIAGPW 118

Query: 122 TTKTHTGPAPLS-----ETAFAFTVGFGIGFYDGFFGPGTGSIFTVCFVALGHFSLVEAT 176
             K     A ++     +   A  + F +  Y G+F  G G I    F  LG   L    
Sbjct: 119 LLKKRLAHANVTCVNTVKPLTAMMILFIVCIYGGYFNGGLGIILLATFGLLGQTQLQGMN 178

Query: 177 ARTKVLNFTSNIAALTFFLIAGLPIWEIGLTMAVGGFIGARMGAKVVISKGQRWIRPLVI 236
               +L+      A+  + +  L   +  L +A+   +G  +GA +     Q  +R  ++
Sbjct: 179 GLKNLLSALLTSIAVVIYALGDLIDGQYLLLLAIMAIVGGYLGAALAYRIPQSLLRGFIV 238

Query: 237 TMSMLMAL 244
            +   M++
Sbjct: 239 LVGFAMSI 246