Pairwise Alignments

Query, 206 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis JJ

 Score = 96.3 bits (238), Expect = 4e-25
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 3/201 (1%)

Query: 4   SLLYLIDMFGTAVFAVSGVLLAGRLKMDPFGVMVLASVTAIGGGTIRDMALGATPVFWIK 63
           ++ +++++ G   FAV G L   +  +D  G++VL  +TA+GGG  RD+ +   P + ++
Sbjct: 5   NIFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIP-YALR 63

Query: 64  DTNYLWVIMITC--ALTMLLVRRPKRLAWWILPVCDAIGLAVFVGIGVEKALIYQDSALI 121
             N + V +I    A+ +  V        +I+ V DA+GL+ F   G   A  +  S   
Sbjct: 64  SPNDMGVALIGVWFAIVIFKVFNEDVSNKYIIQVPDAVGLSAFTTTGAMIAYNFDVSFFG 123

Query: 122 AIIMGVITGCGGGIIRDVLAREIPMVLRSEVYATACIIGGIFHTTALAMGYSSSTALLSG 181
            II+  +TG GGGII D+L ++ P  L  + YA+  IIG I    A+    S  T+ +  
Sbjct: 124 IIILATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLETSAVIC 183

Query: 182 VFSTLLIRLGAIRWHLSLPTF 202
               L+IR+ A+    SLP F
Sbjct: 184 SIVVLMIRIVAMLCKWSLPKF 204