Pairwise Alignments

Query, 1487 a.a., glutamate synthase large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 1482 a.a., glutamate synthase, large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1986 bits (5144), Expect = 0.0
 Identities = 984/1486 (66%), Positives = 1178/1486 (79%), Gaps = 5/1486 (0%)

Query: 1    MALYDPSLEKDNCGFGLIAHMEGQASHKLVRTAISALDRMTHRGGIAADGKTGDGCGLLL 60
            M+LY PS E+DNCGFGLIA M+G+ASH++VRTAI  LDRM HRGGIA+DG+TGDGCGLL+
Sbjct: 1    MSLYHPSFERDNCGFGLIAQMDGEASHRIVRTAIHGLDRMKHRGGIASDGRTGDGCGLLM 60

Query: 61   QKPDSYLRLIAEEQHWKLSKQYAIGMLFLSRDPHKAQLAQQIVNQELAKETLSVAGWRKV 120
            Q P  +   +A E  W LS+++A+GMLFLS+D   A  A+ I+ +EL +ETLS+AGWRKV
Sbjct: 61   QLPLQFFEAVAAENDWHLSRKFAVGMLFLSQDEELADQAKFILERELERETLSIAGWRKV 120

Query: 121  PTNPKVLGPIALDSLPDIQQVFISAPAGWRERDVERRLYIARRRIEKQITDDRDFYICSL 180
            P NP VLG I   SLP I QV I+AP GWRE+D+ERRLY+ARRR+E+QITDD+DFY+ SL
Sbjct: 121  PVNPDVLGEIGKSSLPQIYQVLINAPIGWREKDLERRLYMARRRLEQQITDDKDFYVASL 180

Query: 181  STQVLVYKGLCMPADLPRFYLDLADLRMESAICLFHQRFSTNTQPRWPLAQPFRYLAHNG 240
            S QV+VYKGL MPADLP FY DLAD+R++S+ICLFHQRFSTNT P+WPLAQPFRYLAHNG
Sbjct: 181  SGQVIVYKGLMMPADLPAFYPDLADIRLKSSICLFHQRFSTNTSPKWPLAQPFRYLAHNG 240

Query: 241  EINTIEGNRQWARARAYKFASPLLPDLQSAAPFVNETGSDSSSLDNMLDLFLAGGMDIFR 300
            EINTI GNRQWARARAYKF SPLLPDLQ AAPFVNETGSDSSSLDNML++ L+GGMD++R
Sbjct: 241  EINTITGNRQWARARAYKFNSPLLPDLQQAAPFVNETGSDSSSLDNMLEMLLSGGMDLYR 300

Query: 301  AMRMLVPPAWQNHPDMDPDLRAFYDFNSKHMEPWDGPAGIVLSDGRYAACNLDRNGLRPA 360
            AMR+L+PPAWQ++P+MD +L+AFYDFNS HMEPWDGPAGIV+++GR+AAC +DRNGLRP+
Sbjct: 301  AMRLLIPPAWQSNPEMDDELKAFYDFNSMHMEPWDGPAGIVMTNGRHAACAVDRNGLRPS 360

Query: 361  RYVITKDKLITLASEVGIWDYAPDEVSEKGRVGPGELLVIDTRKGKIWQSSEIDNDLKSR 420
            RYVITKD+++TLASEVGIWDYA DEV EKGRVGPGELLV+DT  G+++QS EIDNDLK R
Sbjct: 361  RYVITKDRILTLASEVGIWDYAADEVIEKGRVGPGELLVLDTLNGRLYQSFEIDNDLKRR 420

Query: 421  HPYREWMENNVHKLTPFSQLPDDKVGERSFDADLLKTYQKQFAMSNEEIDQILRVLGDMA 480
            HPY+EWM  N   L P  QL  ++ G      + L  YQKQF  + EE++Q++ VL    
Sbjct: 421  HPYKEWMAKNSRTLIPAEQLTTEQHGASELSPEQLLQYQKQFGYTREELEQVIWVLAKQG 480

Query: 481  QEAVGSMGDDTPMAVLSSKERLISDYFRQKFAQVTNPPIDPLREKHVMSLATSIGQEMNV 540
            +EA GSMGDDTPMAVLS K R + DYFRQKFAQVTNPPIDPLREKHVMSLAT IG+E N+
Sbjct: 481  EEATGSMGDDTPMAVLSKKSRSLYDYFRQKFAQVTNPPIDPLREKHVMSLATCIGREQNL 540

Query: 541  FCETDGHAHRVTFDSPILLYSDMQQLLTLSDQHYRNTILDINFDPQEKNLKQAVLDLCDK 600
            F ET GHA+RV F+SPILL+SD  QLL L   +YR  I+D+N++P+E  L+QA+  +  +
Sbjct: 541  FNETTGHAYRVMFNSPILLFSDFNQLLGLDSTYYRANIVDLNYEPKE-GLEQAIRRITSE 599

Query: 601  AEQVVREGTVLVVLSDRALTADRLPIPAAMAVGAVQARLVEANLRCDANIIIETGAARDP 660
            AE++ R GT L++LSDRA+      IP AMAVGAVQ  LV  +LRCD NII+ET +ARDP
Sbjct: 600  AERLARSGTTLLILSDRAIDKSAQVIPVAMAVGAVQQMLVSKSLRCDTNIIVETASARDP 659

Query: 661  HHFAVLIGFGATAVYPYLAYETLGKMIDDGALQKSYREVMQNYQYGINKGLYKIMSKMGI 720
            HHFAVL+GFGATA+YPYL YE++  +     L  +   +M N++YGI KGL KIMSKMGI
Sbjct: 660  HHFAVLLGFGATAIYPYLVYESISDLAKRHDLTDT-TALMLNFRYGIEKGLRKIMSKMGI 718

Query: 721  STVASYRCSQLFEAVGLHRDVVDLCFKGVTTRIQGANFDDFEQDLFNLSRKAWAKRKPLE 780
            ST+ SYRCSQ FEA+G+  DV++LCFKGV +RI+GA+F+D   D   L + A+    PL 
Sbjct: 719  STIGSYRCSQQFEAIGIASDVIELCFKGVISRIEGASFEDIANDQALLHKAAYRAHVPLP 778

Query: 781  HGGLLKYVHGGEYHAYNPDVVGTLQKAVKSGEIMDYREFAQQVNQRPVAMLRDLLRLKTS 840
             GGLLKYV GGEYH +NPDVV TLQ ++       Y++FA+ V+ RP+A LRDL+ +K  
Sbjct: 779  QGGLLKYVDGGEYHCFNPDVVNTLQASLIDKNFATYKKFAELVDNRPIATLRDLIGIKAG 838

Query: 841  DKPLPLEHIEPASDLYKRFDSAAMSIGALSPEAHEALATAMNRLGGYSNSGEGGEDPRRF 900
               + L ++E AS+LY RFDSAAMSIGALSPEAHEALA AMNRLGG SNSGEGGED RRF
Sbjct: 839  QTAIELNNVEAASNLYPRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDARRF 898

Query: 901  GTERNSRIKQVASGRFGVTPHYLTNADVLQIKVAQGAKPGEGGQLPGHKVTAEIAKLRYS 960
             TERNS IKQ+AS RFGVT HYL NADVLQIKVAQGAKPGEGGQLPGHKV+ EIA LR++
Sbjct: 899  NTERNSAIKQIASARFGVTAHYLVNADVLQIKVAQGAKPGEGGQLPGHKVSVEIAGLRHA 958

Query: 961  VPGVTLISPPPHHDIYSIEDLAQLIFDLKQINPKALVSVKLVSEPGVGTIATGVAKAYAD 1020
             PGVTLISPPPHHDIYSIEDLAQLIFDLKQIN KAL+SVKLVSEPGVGTIATGVAKAYAD
Sbjct: 959  RPGVTLISPPPHHDIYSIEDLAQLIFDLKQINTKALISVKLVSEPGVGTIATGVAKAYAD 1018

Query: 1021 LITISGYDGGTAASPLTSVKYAGSPWELGLAETQQALVANGLRHKIRLQVDGGLKTGLDV 1080
            +ITISGYDGGT ASP+TSVKYAGSPWELGLAE  Q+LV NGLRHKIRLQVDGGLKTG DV
Sbjct: 1019 MITISGYDGGTGASPITSVKYAGSPWELGLAEVHQSLVENGLRHKIRLQVDGGLKTGTDV 1078

Query: 1081 IKGAILGAESFGFGTAPMVAMGCKFLRICHLNNCATGVATQDETLRKDYFKGLPEMVMNY 1140
            IK A+LGAESFGFGT PM+A+GCK+LRICHLNNCATGVATQD+ LR +++ GLPE VM Y
Sbjct: 1079 IKAALLGAESFGFGTVPMIALGCKYLRICHLNNCATGVATQDKKLRDNHYHGLPERVMTY 1138

Query: 1141 FKGLAEEVRGYLAELGVEKLTDLIGRTDLLEVVEGMTAKQSKLDLSDLLEAPVSPQNLPL 1200
            F+ +AEEVR ++A LGV K  DL+GR++ L  +EG T KQ  LDL+ +L  P    +   
Sbjct: 1139 FEFVAEEVREWMATLGVSKFEDLVGRSEWLHTLEGQTDKQRGLDLAPILYQPNVRASTSR 1198

Query: 1201 YCTEPNTPFDKGALNQKIVEDALAAVENQQSLELYYNVINTDRSIGARLSGEIAKRYGNL 1260
               E N P D G LNQ ++ +  +AV+  +S +  Y++ NTDRS+GARLSG IA   G  
Sbjct: 1199 TWQETNPPADLGLLNQHLLNECQSAVDKGESFDAAYSINNTDRSVGARLSGYIATTLGVK 1258

Query: 1261 GVATSPIKVVLNGTAGQSFGVWNAGGLELYLTGDANDYVGKGMAGGKIVIRPHQGTAFVC 1320
            G + +PIK+  NG+AGQSFGVWN+ GLEL L GDANDYVGKGM+GGKIVI P  G+ F  
Sbjct: 1259 G-SKAPIKLSFNGSAGQSFGVWNSPGLELKLCGDANDYVGKGMSGGKIVIYPPLGSPFQS 1317

Query: 1321 NEATIIGNTCLYGATGGKLFAAGKAGERFAVRNSGTIAVIEGAGDNACEYMTGGIVAILG 1380
              + I+GNTCLYGATGG+ FAAG+AGERFAVRNSG IAV+EG GDN CEYMT GIV +LG
Sbjct: 1318 ERSAIVGNTCLYGATGGRFFAAGQAGERFAVRNSGAIAVVEGLGDNGCEYMTSGIVVVLG 1377

Query: 1381 ATGVNFGAGMTGGFAYVLDENGDFQGRVNDESVEAVALTDLYIHQEHLRGLIAEHLEETG 1440
             TGVNFGAGMTGGFAYV D+ G F  RVN E V+   L +  I Q+HL+GLI EH+ ETG
Sbjct: 1378 KTGVNFGAGMTGGFAYVFDQFGRFNRRVNSELVDTQKL-ESPIQQQHLKGLIEEHVAETG 1436

Query: 1441 SAHAERILANFDEWIPKFYLIKPQAADLRTLLGHQSRSAAELRVQA 1486
            S HA+ IL++F  W+  F L+KP+   +  LL    +S+ EL V+A
Sbjct: 1437 SEHAKMILSDFANWLDCFVLVKPKNIAVADLL-KLEQSSPELAVKA 1481