Pairwise Alignments

Query, 316 a.a., TIGR01212 family radical SAM protein from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., putative radical SAM protein (RefSeq) from Shewanella loihica PV-4

 Score =  345 bits (886), Expect = e-100
 Identities = 168/302 (55%), Positives = 219/302 (72%), Gaps = 1/302 (0%)

Query: 4   PMHLHQLVNTIGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADENTQ 63
           P+ L   VNT G   +R+YG+++ KLTL   F+CPNRDGT+GRGGCTFCNVASF+ E+  
Sbjct: 19  PVGLDSHVNTFGLHCKRQYGQRLKKLTLDAKFTCPNRDGTLGRGGCTFCNVASFSHEHGS 78

Query: 64  QQSIQAQLKD-RAGEIKRAKKYLAYFQAYTSTYAEVQVLKSMYEQALEEADIVGLCVGTR 122
             SI  QL + R     ++ K++AYFQAYTSTY E Q+LK  Y++A+ ++DIVGLCVGTR
Sbjct: 79  IDSIAVQLANGRERAQGKSSKFIAYFQAYTSTYDEYQLLKQRYDEAVADSDIVGLCVGTR 138

Query: 123 PDCVPDAVLKLLADYVQQGYEIWLELGLQTAHDQTLKRINRGHDFACYAEITAKARALGI 182
           PDCV D V+ LLA Y  +G E+WLELGLQ+A+ +TLKRINRGH F  Y +   +AR  G+
Sbjct: 139 PDCVSDEVIALLAGYQARGLEVWLELGLQSANLETLKRINRGHGFEEYRDTVIRARKAGL 198

Query: 183 KVCTHLIVGLPGEERTENLTTLQQVLKVGTDGIKLHGLHIVEGSTMAKAWRAGRLTVLDQ 242
           KVCTHLI+GLPGE   + L + + VL  G DG+K+H LHIVEGSTMAKAWRAGR+++L Q
Sbjct: 199 KVCTHLILGLPGESHEDFLASHRAVLDAGVDGLKIHPLHIVEGSTMAKAWRAGRMSLLTQ 258

Query: 243 DQYVSIACEMIRSTPPEIVYHRVSSAARRPTLLAPLWCENRWWAMTAIGQRLEKEGAQGS 302
           + Y     E+IR TP E+++HRV++ A++P LLAP WC  RW  + AI + LE+ G QG 
Sbjct: 259 EAYAESVGELIRLTPKEVIFHRVTAYAKKPMLLAPDWCAYRWEGLVAIVKNLERLGGQGH 318

Query: 303 LL 304
            L
Sbjct: 319 YL 320