Pairwise Alignments

Query, 316 a.a., TIGR01212 family radical SAM protein from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  361 bits (927), Expect = e-104
 Identities = 174/309 (56%), Positives = 224/309 (72%), Gaps = 6/309 (1%)

Query: 5   MHLHQLVNTIGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADENTQQ 64
           M L   VNT G   + +YGE++ KLT+   F+CPNRDGT+GRGGCTFCNVASF+ +  + 
Sbjct: 1   MGLDAYVNTFGAVCKAKYGERLRKLTIDAKFTCPNRDGTLGRGGCTFCNVASFSYQQKET 60

Query: 65  QSIQAQLKDRAGEIKRAK------KYLAYFQAYTSTYAEVQVLKSMYEQALEEADIVGLC 118
            SI  QL+      K AK      K++AYFQAYTSTY E QVL S Y++A+++++IVGLC
Sbjct: 61  LSISEQLQQGKARYKEAKPKLNADKFIAYFQAYTSTYDEYQVLMSKYDEAVKDSEIVGLC 120

Query: 119 VGTRPDCVPDAVLKLLADYVQQGYEIWLELGLQTAHDQTLKRINRGHDFACYAEITAKAR 178
           VGTRPDCVPD VL LLA Y  +G ++WLELGLQTA+D+TL  INRGH+FACY +  ++AR
Sbjct: 121 VGTRPDCVPDNVLDLLASYQHKGVDVWLELGLQTANDKTLHHINRGHNFACYCDTVSRAR 180

Query: 179 ALGIKVCTHLIVGLPGEERTENLTTLQQVLKVGTDGIKLHGLHIVEGSTMAKAWRAGRLT 238
           + G+KVCTHLI+GLPGE   + + TLQ VL  G DG+KLH LH+VEGSTMAK WRAGRL 
Sbjct: 181 SRGLKVCTHLILGLPGETPLDYMATLQAVLAQGVDGLKLHPLHVVEGSTMAKVWRAGRLP 240

Query: 239 VLDQDQYVSIACEMIRSTPPEIVYHRVSSAARRPTLLAPLWCENRWWAMTAIGQRLEKEG 298
           +L  + Y + A E+IR TP EI++HRV++ A++P LLAP WC  RW  + AI + L + G
Sbjct: 241 LLTMEAYAASAGELIRHTPKEIIFHRVTAYAKKPILLAPDWCGYRWNGLVAIVEDLARNG 300

Query: 299 AQGSLLGTP 307
            QG+ L  P
Sbjct: 301 GQGTALARP 309