Pairwise Alignments

Query, 579 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., deoxyribonuclease from Pseudomonas fluorescens FW300-N2C3

 Score =  139 bits (350), Expect = 3e-37
 Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 10/188 (5%)

Query: 384 IMARDVSERYLAAEQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLS 443
           ++ R++  RY        A +EL +L+ +D+LT +ANRR  DE L   W    R G+PLS
Sbjct: 315 LLRRELRRRY-------RAERELAQLASVDALTGLANRRTLDETLQQEWLRAQRSGQPLS 367

Query: 444 IILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQ 503
           +++ D D+FK +ND +GH  GDE L+ +A    Q   R +D  ARYGGEEF ++LP T  
Sbjct: 368 VLMIDADHFKAFNDRHGHQQGDEALRTLAQLIGQHVRRPADLAARYGGEEFSVVLPETTT 427

Query: 504 SGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQ 563
           +GA  +A+ I + V  L      S+    +TVS+GI T    P    EQ++  AD+ALYQ
Sbjct: 428 AGAFTMAQNIRDAVEQLP---PVSEGEAPMTVSIGIATWTQGPYSELEQLLFAADKALYQ 484

Query: 564 AKANGRNQ 571
           AKA+GRN+
Sbjct: 485 AKASGRNR 492



 Score = 24.6 bits (52), Expect = 0.010
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 193 IEEGSATFKGIMKGRTSQRCWTVTPDGRSCLLE----TYQRVLMSPQGENI------GLL 242
           + EG+ +F GI     +QR +T +  G   L+     +YQ V  S Q   +      G L
Sbjct: 246 LREGNGSFTGISSVDQTQRLYTFSQVGNLPLIVVVALSYQEVFASWQRTALLVSGATGAL 305

Query: 243 GISHDVTDWYNMQRQLREEMEKRRDTEVALAQ 274
            I      W      LR E+ +R   E  LAQ
Sbjct: 306 CIGLLWLTWL-----LRRELRRRYRAERELAQ 332