Pairwise Alignments

Query, 579 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI) from Rhodospirillum rubrum S1H

 Score =  131 bits (330), Expect = 6e-35
 Identities = 92/320 (28%), Positives = 161/320 (50%), Gaps = 15/320 (4%)

Query: 254 MQRQLREEMEKRRDTEVALAQRDTILQNILESSPDSIGIFNENMV--YQACNQPFVEALG 311
           +   L  E E+     +   +    LQ ++ + P+    F++++    + CN  F    G
Sbjct: 182 LAEDLNAEREQLETARLDADEGRRFLQTLIATIPNPF--FHQDLEGRIRGCNAAFAALHG 239

Query: 312 IAEVSDLVGKRLQDVIPEHIYARLSDTDSQVLHQGKSLRYIDRIERSDGEFIWFDVVKSP 371
               +D+ G  + D+      +R    D++++ +G ++ Y      ++G        K+ 
Sbjct: 240 RDHRTDMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAV 299

Query: 372 FRDPASGTNGVLIMARDVSERYLAAEQLEAANQELERLSFLDSLTHVANRRRFDEQLHTL 431
             D A    G++ +  D++E+    +++E A   L RL+  D LT   NRR F E     
Sbjct: 300 LTDAAGQAVGLVAVITDITEQ----KRMEEA---LRRLATTDPLTGALNRRAFMEAARRD 352

Query: 432 WHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGG 491
             L  R G+P+++ L D+D+FK  ND +GH  GDE LK   +A    A R SD + R GG
Sbjct: 353 LALAQRHGEPVTVALADIDHFKRVNDQHGHATGDEALKTF-VATVHGALRASDVLGRMGG 411

Query: 492 EEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPE 551
           EEF ++LP+T  + A+L+A+R+ + +  L +P    +V    TVS+G+  L      + +
Sbjct: 412 EEFALILPHTALASAMLLADRLRQTLANLRVPCPSGEV--EFTVSIGLAELGTHGTTI-D 468

Query: 552 QMVELADRALYQAKANGRNQ 571
            +++ AD ALY+AK+ GRN+
Sbjct: 469 TLLQAADEALYRAKSAGRNR 488



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 33/147 (22%)

Query: 145 SHDIQQERHSLAIAR-----------TALDSLSELIFIKSTEGHLIATNRAF-------- 185
           + D+  ER  L  AR           T + ++    F +  EG +   N AF        
Sbjct: 183 AEDLNAEREQLETARLDADEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGRDH 242

Query: 186 -------------DQFWQGRIEEGSATFKGIMKGRTSQRCWTVTPDGRSCLLETYQRVLM 232
                        D  +  R E   A       G  S        +GR+  +   + VL 
Sbjct: 243 RTDMFGLTVADLTDAAFSSRTERLDAELMA-KGGNVSYEAVFADAEGRARTMIYNKAVLT 301

Query: 233 SPQGENIGLLGISHDVTDWYNMQRQLR 259
              G+ +GL+ +  D+T+   M+  LR
Sbjct: 302 DAAGQAVGLVAVITDITEQKRMEEALR 328