Pairwise Alignments

Query, 579 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (356), Expect = 7e-38
 Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 6/197 (3%)

Query: 385 MARDVSERYLAAE----QLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGK 440
           + + V ER L  E    +L   NQ+L   S +DSLT V NR  FD++L     +  R+  
Sbjct: 425 LEQKVQERTLELEITLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQET 484

Query: 441 PLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPN 500
           P+++++ D+D FK  ND +GHL GD+ LK IA    Q   R +D V+R+GGEEF I+LPN
Sbjct: 485 PIALLMLDIDRFKSINDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPN 544

Query: 501 TPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRA 560
           T   GA+ VAE I + V  + +  +   +   +TVS+G+   +   E    +++E AD+A
Sbjct: 545 TTADGALQVAESIRDTVSCIGLTWEGKPIP--LTVSIGVSADVIMNEQHSTELLEQADKA 602

Query: 561 LYQAKANGRNQTSIYQP 577
           LYQAK +GRNQ  +Y P
Sbjct: 603 LYQAKNSGRNQVKLYAP 619