Pairwise Alignments

Query, 579 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (328), Expect = 6e-35
 Identities = 96/316 (30%), Positives = 157/316 (49%), Gaps = 20/316 (6%)

Query: 266 RDTEVAL-----AQRDTILQNILESSPDSIGIFNENMVYQACNQPFVEALGIAEVSDLVG 320
           +DTE+ L     +  +TI +  ++   +++ + N N   ++CNQ   E L   +VS L G
Sbjct: 8   KDTELPLNFFEHSSLETI-ELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVS-LKG 65

Query: 321 KRLQDVIPEHIYARLSDTDSQVLHQGKSLRYIDRIERSDGEFIWF-----DVVKSPFRDP 375
           +  ++ + EH  AR  +  S  +  G +     +    +   I       DV  S    P
Sbjct: 66  QDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIP 125

Query: 376 ASGTNGVLIMARDVSERYLAAEQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLH 435
                 V++M  D++         +A NQ+L +L+  DSLT +ANRR FDE L   W   
Sbjct: 126 GHEPMFVMVM-HDLTHH-------KAENQKLRKLAATDSLTQLANRRYFDEMLQQHWEEC 177

Query: 436 VREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFG 495
             + +P+S+++ DVDYFK +ND +GH+ GDE L++IA     +        ARYGGEEF 
Sbjct: 178 TAKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKVIAGIVPTEIGLAARYGGEEFA 237

Query: 496 ILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVE 555
           ++LPN     A+ +A++I + +  +       +    ++ S GI   +         MV 
Sbjct: 238 LILPNHNAKMALTIAQKIQQGINNIRFTDQGLRDYVSVSASQGIACEVNGQFRTSLAMVC 297

Query: 556 LADRALYQAKANGRNQ 571
            AD ALY+AKA+GR++
Sbjct: 298 AADTALYRAKADGRDR 313