Pairwise Alignments

Query, 579 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (337), Expect = 5e-36
 Identities = 73/215 (33%), Positives = 125/215 (58%), Gaps = 4/215 (1%)

Query: 361 EFIWFDVVKSPFRDPASGTNGVLIMARDVSERYLAAEQLEAANQELERLSFLDSLTHVAN 420
           +F++ +V   P          + ++  DV++  +   QL+AAN++LERLS  D LT + N
Sbjct: 107 DFMYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHN 166

Query: 421 RRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVAN 480
           RR + + L   + L+ R     S+++ D+D+FK+ ND YGHL GD+ ++ IA   +  + 
Sbjct: 167 RRHWQQCLEHEYDLYARYSGIASLVMIDIDHFKNINDTYGHLAGDKVIQHIAHILSH-SL 225

Query: 481 RHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIV 540
           R +DC  RYGGEEF +++P+T  + A+   ER+ EK+    + ++  K+  ++TVSLG+ 
Sbjct: 226 RETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIASSTVVYEGLKI--KVTVSLGVC 283

Query: 541 TLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575
            L  +        +  +D+ALY+AK  GRN T ++
Sbjct: 284 EL-GKHISSSSSWISCSDKALYEAKQKGRNCTVLH 317