Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  195 bits (495), Expect = 1e-53
 Identities = 146/520 (28%), Positives = 259/520 (49%), Gaps = 51/520 (9%)

Query: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217
           R+ ++ASP+     +  G+    NR  E L G    EL+G        + + Q + E  +
Sbjct: 470 RNVVEASPNAFVLVDVHGDIVMVNRQTEVLFGYTRQELLG--------QPVEQLLPEALR 521

Query: 218 QVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGRHLGL-VGFGR------------ 264
           +          + + E+P+ R+     R++   ++DG  L + +G               
Sbjct: 522 EAHRG----LRQGYTEHPEPRRMGSN-RELFGLHRDGSALPVEIGLSPLRSGDEQLVQAV 576

Query: 265 --DITERKRHEESLEK-------ASRDKTTFISTISHELRTPLNGIVGLSRMLLDTP--- 312
             DI+ RK  E  L +       A+R K+ F++ +SHELRTPLN I+ LS  L       
Sbjct: 577 IIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGN 636

Query: 313 LSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALM 372
           L+ +Q +H   I+ +   L  + ND++D+ K +   ++L    LN  E + E +     M
Sbjct: 637 LNEKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGPM 696

Query: 373 AEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAEC--DAQ 430
           AEQKGL   +E   D+P  +  D  RL+Q+L NLL+NA+KFT++G V +  S     D  
Sbjct: 697 AEQKGLLLKIEVDADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELLASCRSAEDGS 756

Query: 431 HAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDI 490
              + ++V D+GIGI + + E+IF  + Q+  G  + H  GTG+GLA++RQL++++GG +
Sbjct: 757 GQTLQLQVRDSGIGIAKDQHERIFQAFQQI-DGSISRHYGGTGLGLAITRQLVEVLGGQV 815

Query: 491 SVNSEEGFGSTFTVTIRVPLLAEAPIE-IEPQEPQTE---LNIFMVEDIELNITVARSLL 546
           +V SE G G+TFTV + +  ++ A  + + P +PQ       + ++ED     +V   + 
Sbjct: 816 TVESELGQGATFTVVLPIATVSGASTQALLPPQPQRRGRGPGLLIIEDDTDFASVVAEVG 875

Query: 547 ESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYR--THYSSLPPLVA 604
           +S G    +  TGE+ ++      +  V LDI LPD++G+ I    R    +  +P ++ 
Sbjct: 876 QSHGFTSLICNTGEQGLEALRREHFAAVILDILLPDISGWQIHRELRGDERHQGMPVII- 934

Query: 605 LTANVLKDKEEYRQKGMDAAISKPLSVAAVREVIAKMTQH 644
              + +    ++   G    + KP++ + +  +  ++ +H
Sbjct: 935 --ISCVPQPHDWHDDG-SRYLVKPVAQSELERIFIELARH 971



 Score = 53.5 bits (127), Expect = 7e-11
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 533  EDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYY 592
            ED+ L  ++   L + +G +V  A +  EA++ F+   +DLV LD+  P   G ++A   
Sbjct: 1118 EDVRLIYSLTAQL-DELGIQVVPATSAAEALERFDEDAFDLVVLDMSRPGAEGPELARRL 1176

Query: 593  RTHYSSLPPLVALT-ANVLKDKEEYRQKGMDAAISKPLSVAAVREVIAKMTQHHAGESVA 651
            +  +    P+VAL  AN    +E     G D  + KP+   A+RE++ +     +G   A
Sbjct: 1177 KQDHDCQAPIVALVGANDEGARERCSASGADEVLIKPVEATALRELLRRRLDLESGTDEA 1236

Query: 652  K 652
            +
Sbjct: 1237 E 1237