Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1141 a.a., putative integral membrane sensor protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  229 bits (585), Expect = 5e-64
 Identities = 184/643 (28%), Positives = 312/643 (48%), Gaps = 48/643 (7%)

Query: 128 AREEAMADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGC--NRAME 185
           A ++      +++ QR   ++ L E     RS I   P + Y      ++S    + A+E
Sbjct: 372 AEDDFFVAFISDIRQRLSMEMALRENEQKFRSLIGNIPGIAYRCKNDEQWSMIFISNAVE 431

Query: 186 ELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELR 245
           ++TG   S+ +  +P    ++  +      D +  NN         LEY    ++  ++R
Sbjct: 432 KITGYPASDFMLPSP----KRSFSDLFHPDDLEHINNAVPPVGAFNLEYRILHRNG-DIR 486

Query: 246 KVPFYNKDGR-----HLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHE 293
            +  Y    R      + L GF  DITER++ E+ L       E A+  +  F++ +SHE
Sbjct: 487 WMMEYGNHVRDQQSGEMYLDGFIMDITERRQMEQELLEAKDIAEAAATARAAFLANMSHE 546

Query: 294 LRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFP 353
           +RTP+N I+G S +LL++    E+ +HL+TIN +A +L ++ ND++D  K D+ KLEL  
Sbjct: 547 IRTPMNAIIGFSDILLESQFEPEKHRHLKTINHAAKSLLHLLNDVLDSAKLDKGKLELEV 606

Query: 354 AALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKF 413
              +  + + E+     L A +KGL+  +E    L         R+RQVL NL+SNA+KF
Sbjct: 607 RDFSLVQELDEVISTLWLQARRKGLQLTMEVSPKLLPCYAGSPERIRQVLTNLVSNAVKF 666

Query: 414 TKEGGVVMTVSAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTG 473
           T++G V +TV+     Q   +   VEDTGIG+   + +KIF  + Q  +        GTG
Sbjct: 667 TEKGQVRLTVN---PGQGNHVDFVVEDTGIGMSPEQLDKIFDPFTQADASMSRRFG-GTG 722

Query: 474 IGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRV-PLLAEAPIEIEPQEPQTELNIFMV 532
           +G  +S+QL++LMGG IS  SE G GS F  ++ + P + +  + +E       + + +V
Sbjct: 723 LGTTISKQLVELMGGHISAGSELGKGSRFCFSLPLNPGVCDELVPLENHVSLPPMTVLVV 782

Query: 533 EDIELNITVARSLLESMGHKVTVAMTGEEAIQGF-NPTEYDLVFLDIQLPDMTGFDIAHY 591
           +DI  N+ +  +LL   GH+V     G++A+    +    DLV +D+Q+P M G   +  
Sbjct: 783 DDIAQNLELLSTLLGRDGHRVITESDGQQALARMASEPAIDLVLMDVQMPVMDGLSASRA 842

Query: 592 YR--------THYSSLPPLVALTANVLK-DKEEYRQKGMDAAISKPLSVAAVREVIAKMT 642
            R        TH     P++ALTA+VL+ D+   RQ GMD   +KP+    +   IA++ 
Sbjct: 843 RRDKEQREGLTHL----PIIALTASVLEDDRTAARQAGMDGFANKPIDYPLLCAEIARV- 897

Query: 643 QHHAGESVAKVKSNKEKELPDDLYQQLLDLEMLQSYVEIVGSQPVIDSVHLFEQSMPAYL 702
               G   A +++   +  P  L  +   +++  S             + LF +      
Sbjct: 898 ---LGLKHAPIEAATPQSQPGKLIDEKKGMDLWGS------RDSYYRQLALFVEEQAEQF 948

Query: 703 AVLDSNMVAKDQEGIVSEAHKIKGAAGSVGLKRIQKIAQKAQS 745
             L S   A D   +   AH +KG + ++ L R+ +  +K +S
Sbjct: 949 ERLSSQCHACDWPALKQTAHGLKGVSANLSLTRLSRNLEKLES 991



 Score = 27.7 bits (60), Expect = 0.004
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 140 VYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVG 197
           +Y+ +   +  +E    +++ ++ + D I   ++ G  +  N+A E+L G R  EL+G
Sbjct: 256 IYKYKDISLRASESKRRVQAIMETAIDGIVTIDSHGIITDVNQATEKLLGWRADELIG 313