Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  201 bits (510), Expect = 4e-55
 Identities = 160/623 (25%), Positives = 297/623 (47%), Gaps = 48/623 (7%)

Query: 139  EVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGL 198
            ++  R++ + ELA+  A  R+  D +   I   + +G    CN       G+  S+L G+
Sbjct: 885  DISGRKRMETELAQSEAHFRALFDNAGIGIVNLDDRGIIKDCN-------GQFVSDL-GI 936

Query: 199  TPWDVYRKEIAQSIVETDQQVF---------NNNTAITYEQWLEYPDGRKSFFELRKVPF 249
            +   + RK++A  +   D+ +          +   +I+ E  +   DG   +  +     
Sbjct: 937  SSDSLKRKQLADLMHPEDRALATGLYQALAESEQGSISGEWRMLDGDGELMWMAVIASVL 996

Query: 250  YNKDGRHLGLVGFGRDITERKRHEESLEKASRD-------KTTFISTISHELRTPLNGIV 302
               DG    +V    +IT  K   + L  A  D       K+ F++ +SHE+RTP+N I+
Sbjct: 997  EEGDGGERSVVMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAII 1056

Query: 303  GLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFV 362
            G+S++ L T L  +QR +++ I  ++ +L  I NDI+D  K +  KL++       +  +
Sbjct: 1057 GMSQLCLQTELDRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTIL 1116

Query: 363  AEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMT 422
             ++  + ++ A  K L         +P+ +E D  RL QVL NL++NA+KFT+ G V+++
Sbjct: 1117 EDLGDMFSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLS 1176

Query: 423  VSAEC-DAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQ 481
            +S    D    ++   V D+GIG+   +Q K+F  + Q  +     +  GTG+GLA+ +Q
Sbjct: 1177 ISELARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYG-GTGLGLAICKQ 1235

Query: 482  LIKLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEIEPQEPQTELNIFMVEDIELNITV 541
            L++LMGG+I V+S+ G GSTF  T+ V +   A + +E  +    + + +V+D      +
Sbjct: 1236 LVELMGGEIGVDSQFGNGSTFYFTVSVKVAQNAQLNVE--QELEGMAVLVVDDNSTARDI 1293

Query: 542  ARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSSLPP 601
             R+ L+SMG  V  A +G EA++     +Y +  +D ++P+M G + A   R      PP
Sbjct: 1294 LRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTETA--ARMRELKQPP 1351

Query: 602  LVALTANVLKDK--EEYRQKGMDAAISKPLSVAAV------------REVIAKMTQHHAG 647
            L+ + +     +  ++  + G++  I+KP+S + +             + + +  Q    
Sbjct: 1352 LILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDA 1411

Query: 648  ESVAKVKSNKEKELPDDLYQQLLDLEMLQ--SYVEIVGSQPVIDSVHLFEQSMPAYLAVL 705
            + ++ +K  +   + D+   Q +  E L+    V  +     I    L +QS    L ++
Sbjct: 1412 QKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFD--LVLM 1469

Query: 706  DSNMVAKDQEGIVSEAHKIKGAA 728
            D  M   D      E  K+ G A
Sbjct: 1470 DCQMPVMDGYQATRELRKLPGLA 1492



 Score = 75.9 bits (185), Expect = 2e-17
 Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 27/266 (10%)

Query: 529  IFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDI 588
            I +VED E+N  VA   LE +G  +++A  G+ A++      +DLV +D Q+P M G+  
Sbjct: 1422 ILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGYQA 1481

Query: 589  AHYYRTHYSSLP-----PLVALTANVLK-DKEEYRQKGMDAAISKPLSVAAVREVIAKMT 642
                R     LP     P+VA+TAN +  DKE     GM+  I+KP+ V  + + + +  
Sbjct: 1482 TRELR----KLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYL 1537

Query: 643  QHHA-GESVAKVKSNKEKELPD-DLYQQLLDLEMLQSYVEIVGSQPVIDSVHLFEQSMPA 700
               A G   A   +  ++E+     + +  DL++ +      G Q V +S  L+ + +  
Sbjct: 1538 CPEAKGLESADADAAADQEVTSLTSWPEHEDLDIDR------GLQLVQNSERLYRRILER 1591

Query: 701  YLAV-------LDSNMVAKDQEGIVSEAHKIKGAAGSVGLKRIQKIAQKAQSPEAPAWWE 753
            ++         +   +    QE  V  AH +KG AG++    + + A++ ++  A    E
Sbjct: 1592 FVTSQAQAGKKIRKALALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQG--E 1649

Query: 754  NISDWVEEIKNEYQSDIALLKRWLTQ 779
                 +E ++    + +A ++RW+T+
Sbjct: 1650 ACEAELEAVETRLVTIVAAIERWMTE 1675



 Score = 31.2 bits (69), Expect = 5e-04
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 123 IKAEEAREEAMADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNR 182
           + A+   +  +A    ++ ++   + ++ E  +  R  +   P  +Y     G ++    
Sbjct: 610 LPADSRGQRQVAASIRDLTEQLAVERQIRESESRFRGLVSNIPGAVYRTRINGTWT---- 665

Query: 183 AMEELTGKRESELVGLTPW---DVYRKEIAQSIVETDQQ--------VFNNNTAITYEQW 231
              E      +EL G   W   +  ++     I++ D +              A   E  
Sbjct: 666 --MEYVSDNITELTGYPAWHFIESKKRSFGSLILDEDAERCDAIISGALAEQHAFEVEYR 723

Query: 232 LEYPDGRKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESLEKASRDKTTFISTI 290
           + + DG   +   +    Y++DG  +   G   DITE K  +E +E++     T   ++
Sbjct: 724 IRHRDGSLRWVHEKGKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLETITESV 782