Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 903 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  242 bits (618), Expect = 6e-68
 Identities = 188/667 (28%), Positives = 326/667 (48%), Gaps = 41/667 (6%)

Query: 117 QEIEERIKAEEAREEAMADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGE 176
           ++I + ++AE    +  A LE +V +R     +L +   L  + ++ +   +   +  G 
Sbjct: 215 RDITDLVQAEREVHDLNAALERQVAERT---CQLEKTLTLQTAILERAAYAVIATDVTGT 271

Query: 177 FSGCNRAMEELTGKRESELVGLTPWDVYRKEI-----AQSIVETDQQVFNNNTAITYEQW 231
            +  N A E + G +  +L+G     ++         A+++ +    V +N   +     
Sbjct: 272 ITLFNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGISVSSNLGVLQARLA 331

Query: 232 LEYPD----------GRKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESL----- 276
              PD          G +    L       K G +LG++G   D+TE+ ++E+ L     
Sbjct: 332 RNDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARA 391

Query: 277 --EKASRDKTTFISTISHELRTPLNGIVGLSRMLL-DTPLSGEQRKHLQTINVSAVTLGN 333
             E+AS  K  F++ +SHE+RTPLNGI+G + ++L D  L+ + R+ +  I  ++ +L  
Sbjct: 392 SAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQVMRIFEASDSLRV 451

Query: 334 IFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVE 393
           I +DI+D  K +   L L    L   E +A    +    A++KGL+         P L+ 
Sbjct: 452 IIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQATPPVLIG 511

Query: 394 VDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH-AEITIEVEDTGIGIPEAEQEK 452
            D+ RLRQVL NL++NA+KFT  G V + VS      H   + I V DTGIGI    Q+ 
Sbjct: 512 -DAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGISPEAQKG 570

Query: 453 IFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPLLA 512
           +F  + Q           GTG+GLA+S+++++ M G++ ++S+ G GSTF   + +P+  
Sbjct: 571 LFKRFSQADETISRKFG-GTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAE 629

Query: 513 EAPIE-IEPQ-EPQTELNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTE 570
              IE ++ Q      + I +V+D+E+N  + +++L   GH V +A +G  AI       
Sbjct: 630 RLDIERLDAQVHCSRSVKILVVDDVEMNRDLCKTMLTRAGHDVDLADSGATAIAMVASRT 689

Query: 571 YDLVFLDIQLPDMTGFDIAHYYRT--HYSSLPPLVALTANVLKDK-EEYRQKGMDAAISK 627
           YDLVF+D+Q+ +M G +     R   H     P++ALTANVL ++ E Y+  G+D  + K
Sbjct: 690 YDLVFMDVQMGEMDGLEATRRIRALGHAYRDVPIIALTANVLPEQVERYKAAGVDGHLGK 749

Query: 628 PLSVAAVREVIAKMTQ----HHAGESVAKVKSNKEKELPDDLYQQLLDLEMLQSYVEIVG 683
           P++ A +   +A+       H   E +A V+   E E P      L DL M  S  +I G
Sbjct: 750 PINRAELLACVARWIDGDIAHVPSEPLAPVELGSEPEHPVRDQAALEDLRMFASEHDIAG 809

Query: 684 -SQPVIDSVHLFEQSMPAYLAVLDSNMVAKDQEGIVSEAHKIKGAAGSVGLKRIQKIAQK 742
            ++ + D++       P ++  +  +  A+   G  + AHK    AG +G K++    ++
Sbjct: 810 FAEQLRDTITRIRAQWPHHIDAMKLDHEARTALG--AAAHKTVSLAGQLGFKQLAAACRR 867

Query: 743 AQSPEAP 749
            ++  AP
Sbjct: 868 MEAACAP 874



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 153 RTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSI 212
           R A L + ++ S   I  ++  G     N+  E L G    + +G    ++    +   +
Sbjct: 103 RQAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFGYTAEQAIGQNATELM---VPDDL 159

Query: 213 VETDQQVFN---NNTAITYEQWLEYPDGRKSFFELRKV--PFYNKDGRHLGLVGFGRDIT 267
            + +QQ+ +   + TA  Y  W +      +  ++     P    DGR +G+    RDIT
Sbjct: 160 RDEEQQMLSGISDGTAFAY-LWTKRKRANGTLVDVAVSISPIRADDGRLIGMAASMRDIT 218

Query: 268 -----ERKRHE--ESLEKASRDKT 284
                ER+ H+   +LE+   ++T
Sbjct: 219 DLVQAEREVHDLNAALERQVAERT 242