Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  234 bits (596), Expect = 2e-65
 Identities = 177/584 (30%), Positives = 285/584 (48%), Gaps = 43/584 (7%)

Query: 217  QQVFNNNTAITYEQWLEYPDGR---KSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHE 273
            + V  +  A+  E+ +   DGR   + +  +   P   +   + G +   RDITERK  E
Sbjct: 461  EAVVEDRRAVLGEE-IRLADGRVLERDYIPIYLFPQVAQPEDYRGHLWLFRDITERKHAE 519

Query: 274  -------ESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINV 326
                   E+ E A+R K  F++ +SHE+RTP+NGI+G++ + LD+ L+ EQR +L+ +  
Sbjct: 520  LELQQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDSALTPEQRDYLEMVKS 579

Query: 327  SAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLT 386
            SA  L  I NDI+D  K +  KLEL     +  + + E      L A Q+ L    E   
Sbjct: 580  SADALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLELRARQRSLTLRCEVPE 639

Query: 387  DLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVEDTGIGIP 446
            ++      D  RLRQVL NL+ NA+KFT+EG V + V A     H      V DTGIGIP
Sbjct: 640  EVADGYLGDPGRLRQVLINLVGNAIKFTEEGQVAVRVEARDGLLH----FAVSDTGIGIP 695

Query: 447  EAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTI 506
              +Q+ IF  + Q  S        GTG+GL +  +L++LMGG + V S+ G GSTF  T 
Sbjct: 696  ADKQQLIFEAFSQADSSVTRRFG-GTGLGLTICTRLVRLMGGHMWVESDPGQGSTFHFTA 754

Query: 507  RVPLLAEAPIEIEPQEPQTE-----LNIFMVEDIELNITVARSLLESMGHKVTVAMTGEE 561
            R+  +A      E    + E     L + + ED  +N  +  +LL+  GH+VT+A  G++
Sbjct: 755  RLEAVAGPAESGEADAGRGEVVLPPLRLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQ 814

Query: 562  AIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSSLP-----PLVALTANVLK-DKEE 615
            A+       +DLV +D+Q+P M G +     R   ++       P+VA+TAN +  D+E 
Sbjct: 815  ALAALATDHFDLVLMDMQMPVMGGLEATRRIRAAEAARGDGQHLPIVAMTANAMAGDREL 874

Query: 616  YRQKGMDAAISKPLS----VAAVREVIAKMTQHHAG-------ESVAKVKSNKEKELPDD 664
              + GMD  +SKPL      +A+ +V+       AG       +  A V +   +  P  
Sbjct: 875  CLEAGMDGYVSKPLRRDEFFSAMADVLPPERLRQAGAAAAIPADGQAAVAAAPSESAPAA 934

Query: 665  LYQQLLDLEMLQSYVEIVGSQPVIDS-VHLFEQSMPAYLAVLDSNMVAKDQEGIVSEAHK 723
            L +     +  ++   + G + +    V +F   +P YL  L++ +  +D E +  EAH 
Sbjct: 935  LRR----CDRAEAVARLEGDEELFAMLVKMFSDDLPNYLQRLNAALAGQDMEALSREAHT 990

Query: 724  IKGAAGSVGLKRIQKIAQKAQSPEAPAWWENISDWVEEIKNEYQ 767
            +KG   +    R   +A + ++       E +   V +++ E +
Sbjct: 991  LKGLLATFSAGRGTALALELETRAKGGHVETLGVLVRQLQEELE 1034



 Score = 36.6 bits (83), Expect = 7e-06
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 138 NEVYQREKTQVE-LAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELV 196
           N   +R K Q E + E +  L+S  DA  + +   +A+G  +  N   E + G R  EL+
Sbjct: 243 NRASRRLKQQEETIEENSRFLQSLTDALGEGVIATDAEGRCTFINAEGERMLGWRRQELL 302

Query: 197 GLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQW------LEYPDGRKSFFELRKVPFY 250
           G         + A     +  +   ++ A+    +          DG      +  VP +
Sbjct: 303 GKDVHHTIHFQTATGFHVSQDECPLHSPAVASRPFRSELDAFTRSDGSVFPISVVSVPLF 362

Query: 251 NKDGRHLGLVGFGRDITERKRHEESL 276
             + R  G V   +DITERKR E+ L
Sbjct: 363 EGE-RFTGTVAAFQDITERKRDEDFL 387