Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  209 bits (531), Expect = 7e-58
 Identities = 162/525 (30%), Positives = 248/525 (47%), Gaps = 38/525 (7%)

Query: 143 REKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSG----CNRAMEELTGKRESELVGL 198
           R K +VE  ++T L     DAS   I Y +            NR M  + G    E++GL
Sbjct: 208 RAKEEVEAIQQTTL-----DASAIGIAYLDTSNHEDRHVVLANRQMAAMFGYGSQEVIGL 262

Query: 199 TPWDVY-RKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGRHL 257
              ++Y  +E   S  +    +      +  E  +   +G + F+        N D    
Sbjct: 263 RAEELYPSRESFVSATQDIMPILEQGQVMRQELIMRRRNG-ECFWCAVSGKAINPDDLSR 321

Query: 258 GLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLLD 310
           G+V    D+TERK  E  L       E A+R K+ F++ +SHE+RTP  GI+G+  +LL 
Sbjct: 322 GVVWTFEDVTERKAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLDLLLH 381

Query: 311 TPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAA 370
           TPL+ +Q ++++    S   L  I NDI+D+ K +  KL + P  ++    + E+  + A
Sbjct: 382 TPLNEKQERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQA 441

Query: 371 LMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQ 430
             A QKGL F       +P  +  D  RLRQ++ NLL+NA+KFT  G V + +     A 
Sbjct: 442 AAAAQKGLEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAP 501

Query: 431 -HAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGD 489
               + +EV D+GIG+P   QE IF  + Q  S    L   GTG+GL + +QL++LM G 
Sbjct: 502 GRQHLRVEVRDSGIGVPPELQETIFDKFTQADSSTTRLFG-GTGLGLTICKQLVELMHGS 560

Query: 490 ISVNSEEGFGSTFTVTIRVP-----------LLAEAPIEIEPQEPQTELNIFMVEDIELN 538
           I V+S  G GS F   I +P           L A +PI   P++ +    I +V+D E N
Sbjct: 561 IGVSSNSGEGSCFWFDIELPESDPTVSPVPVLPAGSPITALPRDTR----ILLVDDTEAN 616

Query: 539 ITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSS 598
             V    L     +V  A  G EA+      + D + +D Q+  M G++     R     
Sbjct: 617 REVLAEYLAQAHCQVRQAANGLEAVTLAESWQPDAILMDCQMAGMDGYEATRQIRIQEGQ 676

Query: 599 --LPPLVALTANVLK-DKEEYRQKGMDAAISKPLSVAAVREVIAK 640
               P++ALTA V++ D+E+    GMD  + KP+    +   I K
Sbjct: 677 RRRTPIIALTAFVMRGDREKCLAAGMDDYLPKPVDAQTLIATIGK 721



 Score = 50.4 bits (119), Expect = 4e-10
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 523 PQTELNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPD 582
           P+    I +V+D       +  LLE++G +V  A +GEEA+Q     ++DLV +D ++P 
Sbjct: 734 PRFSGRILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEADFDLVLMDCRMPG 793

Query: 583 MTGFDIAHYYRTHYSSLP-PLVALTA-NVLKDKEEYRQKGMDAAISKPLS 630
           + G      +R      P  ++ALTA +  + + + R+ GM+  ++KP S
Sbjct: 794 LDGCATTRAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFS 843