Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  246 bits (628), Expect = 4e-69
 Identities = 172/540 (31%), Positives = 268/540 (49%), Gaps = 46/540 (8%)

Query: 144 EKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDV 203
           ++   EL  + + L + +   PD ++ ++  G F  CN A E + G+ E E++G + +D 
Sbjct: 293 KRRTAELERQRSHLHTLLRGIPDPLWLKDEAGVFIACNPAFERMMGRPEQEIIGCSDYDF 352

Query: 204 YRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGR-KSFFELRKVPFYNKDGRHLGLVGF 262
             +E A    + D+QV    T  + E+W+   DG  +  FE  K P     G+ LG++G 
Sbjct: 353 VSREQADFFRDKDRQVLVAGTPQSNEEWITQADGSGQRLFETVKTPIVEPQGKVLGVLGV 412

Query: 263 GRDITERKRHEESLEKAS-----------------RD--------KTTFISTISHELRTP 297
            RDITERKR E  +   S                 RD        K+ F++ +SHE+RTP
Sbjct: 413 ARDITERKRLEAEVSNYSHHLEELVAERTEELARARDAANAANVAKSAFLANMSHEIRTP 472

Query: 298 LNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALN 357
           +N I+GL+ +L     S +Q+  L  I+ +A  L +I NDI+D+ K +  +L L    + 
Sbjct: 473 MNAIIGLTHILKKGEPSPQQQDRLDKIDDAASHLLSIINDILDLSKIEAERLVLEEQPVE 532

Query: 358 FEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEG 417
               V+ I  + A  A +K +    E +  LP  +  D TRL Q + N  SNA+KFT+ G
Sbjct: 533 LGRIVSHIFSMLAEGARKKDIVLKSE-VDPLPPYLLGDPTRLTQAILNYASNAVKFTEWG 591

Query: 418 GVVMTVSA-ECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGL 476
            V + +   E       +  EVEDTGIGI    Q  +FA + Q   G  +    GTG+GL
Sbjct: 592 SVTLRIKVLELTPADVFLRFEVEDTGIGIAPEVQPLLFAPFQQA-DGSTSRRFGGTGLGL 650

Query: 477 AVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEIEPQEPQTE---------- 526
            ++R+L ++MGGD  V+S  GFGSTF  + R+  L EA   +    P+ +          
Sbjct: 651 VITRRLAQIMGGDAGVDSRLGFGSTFWFSARLK-LGEARAALPEDGPRPDSAEGELLQHY 709

Query: 527 --LNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGF--NPTEYDLVFLDIQLPD 582
               I + ED  +N  VAR LLE  G +V +A  G EA+       T Y LV +D+Q+P 
Sbjct: 710 RGTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVACLERGTTPYALVLMDMQMPG 769

Query: 583 MTGFDIA-HYYRTHYSSLPPLVALTANVL-KDKEEYRQKGMDAAISKPLSVAAVREVIAK 640
           M G +   H  R       P++++TAN   +D+E   + GM+  + KP++   +  ++ K
Sbjct: 770 MDGLEATRHIRRLPGMESLPIISMTANAFGEDRERCLEAGMNDFVPKPVNPEVLYAMLLK 829