Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  222 bits (566), Expect = 7e-62
 Identities = 153/486 (31%), Positives = 245/486 (50%), Gaps = 10/486 (2%)

Query: 136 LENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESEL 195
           +  ++  R+  +  L E+    R  +D  P  +Y+++ +G + G N+A  +  G   S  
Sbjct: 259 IRTDITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDTQGRYQGFNKAFADFFGIEPSLW 318

Query: 196 VGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGR 255
           +G    D+   E+A+  V  D++VF      +YE  L  P G +      K      DG 
Sbjct: 319 IGRHVRDLLPPELAEQHVARDEEVFARGGRQSYEIELITPAGARYDTLYNKAALTRPDGS 378

Query: 256 HLGLVGFGRDITERKRHE-------ESLEKASRDKTTFISTISHELRTPLNGIVGLSRML 308
             GLVG   DI+ERKR E       E+ E A+R K+ F++ +SHE+RTP+NG++G++ + 
Sbjct: 379 VRGLVGTIMDISERKRWEAEILRAKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELA 438

Query: 309 LDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVL 368
           LDT L+ EQR +L+ + +SA  L +I +DI+D  K +  +L++     + E+  A+    
Sbjct: 439 LDTELTEEQRDYLEAVQMSANALLSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRT 498

Query: 369 AALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVS-AEC 427
            A+ A+QKGL     R   +P  +  D  RLRQ+L NLL NA+KFT+ G + + V  AE 
Sbjct: 499 VAVRADQKGLELLARRGPGVPRRLLGDPGRLRQILLNLLGNAIKFTERGEIEVAVELAEP 558

Query: 428 DAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMG 487
            A    +   V DTGIGI   +QE IF  + Q  S        GTG+GL +  +L +LMG
Sbjct: 559 GAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQEDSSTTRRFG-GTGLGLTICSRLCELMG 617

Query: 488 GDISVNSEEGFGSTFTVTIRVPLLAEAPIEIEPQEPQTELNIFMVEDIELNITVARSLLE 547
           G I V+S  G GS F  T+++P    A  E E +       + +V +      + + LL 
Sbjct: 618 GRIWVDSVPGQGSAFHFTLQLPTDGAAAPEPERRLSGKPALLLVVANARQRCRL-QGLLA 676

Query: 548 SMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSSLPPLVALTA 607
           S G  V  A +G E +      ++D V  D +  D    D+  +       +P L+ L+ 
Sbjct: 677 SWGATVVAAASGAEGLALLEQGQWDGVVADSRPVDGDAGDLLEHLARSPGRVPLLMLLSP 736

Query: 608 NVLKDK 613
           + ++ +
Sbjct: 737 SRMRQE 742



 Score = 72.0 bits (175), Expect = 2e-16
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 33/218 (15%)

Query: 523 PQTELNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPD 582
           P   L + + ED  +N  + R++LE MGH+VT+A  G EA+       +DLV +D+Q+P+
Sbjct: 790 PPAGLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPE 849

Query: 583 MTGFDIAHYYRTHYSS--LPPL--VALTANVLK-DKEEYRQKGMDAAISKPLSVAAVREV 637
           M G       R    +  L PL   AL+A   + D++     GMD  + KPL    ++EV
Sbjct: 850 MGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEV 909

Query: 638 IAKMT---QHHAGESVAKVKSNKEKELPDDLYQQLLDLEMLQSYVEIVGSQPVIDSVHLF 694
           +A +    Q   G    ++    ++++                 ++I+G         +F
Sbjct: 910 LAGLARPGQEEGGFDYGRMLEGADRDV-----------------LQIIGD--------VF 944

Query: 695 EQSMPAYLAVLDSNMVAKDQEGIVSEAHKIKGAAGSVG 732
                  +A ++  + A D E +   AH ++GAA + G
Sbjct: 945 PGLARLEMAAMEEALAAADWERLGRVAHSLRGAAANFG 982



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 42/203 (20%), Positives = 82/203 (40%), Gaps = 4/203 (1%)

Query: 80  LEESRQRLSKLVSKLK-DMRSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMADL-E 137
           LE S + L++  ++ + ++ +R+Q +    +     L Q     +  E+A  E+++ L +
Sbjct: 73  LELSSEDLNRAYARQEQELVAREQSIASLRETANRLLGQMGLPALSPEDASLESLSQLMD 132

Query: 138 NEVYQREKTQVELAERTALL--RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESEL 195
             V +RE +++ L +  + L  + F      ++   + +G     N    E++G    EL
Sbjct: 133 TLVRERESSRIRLHQAHSSLEQQKFALDQHAIVSVTDVEGFIIEANDRFCEISGYSREEL 192

Query: 196 VGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGR 255
           VG     V       +  +       +      E      DGR  +     VPF++  G 
Sbjct: 193 VGRNHRVVKSGIHPPAFYQEMWDTIVHGRVWQGEVCNRSKDGRLYWVSATVVPFFDDLGV 252

Query: 256 HLGLVGFGRDITERKRHEESLEK 278
               +    DIT RK  E  L++
Sbjct: 253 PYQYIAIRTDITARKLAEARLDE 275