Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1281 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  195 bits (496), Expect = 1e-53
 Identities = 152/539 (28%), Positives = 250/539 (46%), Gaps = 53/539 (9%)

Query: 134  ADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRES 193
            A +  ++ +R++    +A   ++ R+  + S D +      G  +  N AM  + G    
Sbjct: 651  ASVWRDITERKEQARAMASEVSMRRALFEHSRDGLVLLTEDGAVAEANPAMAAMLGYTPE 710

Query: 194  ELVGLTPWD----VYRKEIAQSIV--------------ETDQQVFNNNTAITYEQWLEYP 235
            E+  L  WD    + R++I   +                 D + FN   + +  +W    
Sbjct: 711  EMERLHVWDWDAAIPREQITAMLRALSKGGEFFQTVHRHKDGRTFNVEVSASRVEW---- 766

Query: 236  DG--------RKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESLEKASRDKTTFI 287
            +G        R   F LR      +   HL  +   R +   +  +E+ E ASR K+ F+
Sbjct: 767  EGQAYVLCLHRDITFRLRLEQELEQHRHHLEELVHARTMELAEARDEA-ESASRAKSAFL 825

Query: 288  STISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRR 347
            + +SHE+RTP+N I+GLS +L         R+ +  I+ +A  L NI NDI+D+ K +  
Sbjct: 826  ANMSHEIRTPMNAILGLSHLLGREVGDARARERVDKIHGAATHLLNIINDILDLSKIEAE 885

Query: 348  KLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLL 407
            KL L              E L     E KGLR +      LP ++  D+  L+Q+L N L
Sbjct: 886  KLHLDMQDFLLARLFDNAENLLRPQLEAKGLRLERHLDPALPPVLRGDAMHLQQILVNFL 945

Query: 408  SNAMKFTKEGGVVMTVSAECDAQ-HAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDN 466
            SNA+KF+ +G + +       +Q   E+ +EV D GIGI   +Q  +F  + Q  +    
Sbjct: 946  SNAVKFSDQGHITLGARLLSRSQSQVELRLEVADQGIGIAPEQQAALFQAFEQADNSTTR 1005

Query: 467  LHAVGTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL----------LAEAPI 516
             +  GTG+GLA+S++LI+LMGGDI V+S+ G GS F +++R+ +           AE  +
Sbjct: 1006 KYG-GTGLGLAISKRLIRLMGGDIGVDSKPGQGSVFWISLRLEVADTAAGTTAATAEQEL 1064

Query: 517  EIEPQEPQTELNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFL 576
                +       I + ED  LN  VA+ LL   G  V+VA  G +A+       +DLV +
Sbjct: 1065 PARLRARHGGCRILLAEDNALNQEVAQDLLHDAGLAVSVAEDGHQAVSLAQSGGFDLVLM 1124

Query: 577  DIQLPDMTGFDIAHYYRTHYSSLP-----PLVALTANVL-KDKEEYRQKGMDAAISKPL 629
            D+ +P + G       R     LP     P++A+TA    +D+    + GM+  ++KP+
Sbjct: 1125 DVNMPHLDGLQATRAIR----ELPGCADLPILAMTAGAFAEDRARCLEAGMNDFVAKPV 1179



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 8/154 (5%)

Query: 126 EEAREEAMADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAK-GEFSGCNRAM 184
           E   +E++A    +   R +T+  L ER  +  +    +P+ I   +A+ G F   N   
Sbjct: 519 ERTLQESIAQRLGDAISRLQTRSALREREDIFSAIAAQAPESICLIDAESGRFIEFNDMT 578

Query: 185 EELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFEL 244
               G    EL GL+  D+  +   Q + +    V  +    T E  L   DG+   F +
Sbjct: 579 CASLGYTREELAGLSIADLEAEMDPQQVRQALAAVIRDGQHST-ETRLRRKDGQVRDFWV 637

Query: 245 --RKVPFYNKDGRHLGLVGFGRDITERKRHEESL 276
             R+V     DGR LG     RDITERK    ++
Sbjct: 638 SNRRVEM---DGR-LGCASVWRDITERKEQARAM 667