Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  222 bits (566), Expect = 9e-62
 Identities = 171/619 (27%), Positives = 298/619 (48%), Gaps = 42/619 (6%)

Query: 117  QEIEERIKAEEAREEAMAD----LENEVYQREKTQVELAERTA----LLRSFIDASPDLI 168
            +EI+    A+E   E + D    LE  V QR +   +  E ++    LL++ +D+ P+ +
Sbjct: 396  REIDRLAAAQEHMRETLQDATLRLEERVEQRTRELADAREESSRQLVLLQAIMDSMPNPV 455

Query: 169  YYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDV--YRKEIAQSIVETDQQVFNNNTAI 226
            ++++A+G F GCNRA E+  G    ++VG T  ++    +E  Q +    + +  +   +
Sbjct: 456  FFKDAEGRFLGCNRAYEDTFGVGRGQIVGKTVRELPFLSEEEKQELQAVSEAIIRDGIMM 515

Query: 227  TYEQWLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESL-------EKA 279
              E  L + DG +         F  +DG   G+VG   DI+ERK  EE L       E+A
Sbjct: 516  HRELQLPFADGLRHDTLYWANGFSREDGTPGGMVGVVVDISERKLMEEELRRARATAEEA 575

Query: 280  SRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDII 339
            +  K+ F++ +SHE+RTP+N I+G++ + + T L+ +QR ++  I+ +A++L  I NDI+
Sbjct: 576  TEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQRDYVGKIHNAAISLLGIINDIL 635

Query: 340  DMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRL 399
            D  K +  KL L     + E+ +  +  L  L A +KGL          P+ +  D  RL
Sbjct: 636  DFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLFNVNAGTPAGLVGDPLRL 695

Query: 400  RQVLWNLLSNAMKFTKEGGVVMTVSAECDA-QHAEITIEVEDTGIGIPEAEQEKIFAMYY 458
             Q+L NL+SNA+KFT+ G + +T      A    ++   +ED GIG+   +   +F  + 
Sbjct: 696  NQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQFWIEDMGIGMSREQLLHLFQAFT 755

Query: 459  QVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEI 518
            Q   G       GTG+GL++SR+L+++MGG I  +S  G GSTF  T       E     
Sbjct: 756  QA-DGSTTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAWFGRAEELARPR 814

Query: 519  EPQEPQTELNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTE-----YDL 573
                    L + + +D      +    L  +  +  +  +G EA+      +     Y +
Sbjct: 815  TLPASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEALAQLTEMQGGADPYRV 874

Query: 574  VFLDIQLPDMTGFDIAHYYR--THYSSLPPLVALTANVLKDKEEYRQK----GMDAAISK 627
            +FLD Q+PD+ G    H  +     +  P +V +TA    D+EE R++    G+   + K
Sbjct: 875  LFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTA---YDQEELRRQTENLGICGILVK 931

Query: 628  PLSVAAVREVI--------AKMTQHHAGESVAKVKSNKEKELPDDLYQQLLDLEMLQSY- 678
            P+S + + +V+        A  T  H      ++   +     D+   Q + +E+LQS  
Sbjct: 932  PVSASTLFDVLVSLVDADNAPATPLHIAAPQTRIDGMRILLAEDNEINQQIAVELLQSMG 991

Query: 679  VEIVGSQPVIDSVHLFEQS 697
             ++  +   + +V L E+S
Sbjct: 992  AQVTVAGDGLQAVELLERS 1010



 Score = 74.3 bits (181), Expect = 4e-17
 Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 14/228 (6%)

Query: 523  PQTELN---IFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPT---EYDLVFL 576
            PQT ++   I + ED E+N  +A  LL+SMG +VTVA  G +A++    +    +DLV +
Sbjct: 961  PQTRIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLM 1020

Query: 577  DIQLPDMTGFDIAHYYR--THYSSLPPLVALTANVL-KDKEEYRQKGMDAAISKPLSVAA 633
            D+Q+P + G+D     R    ++ L P++A+TA+ + +++E     GM+  ++KP+   A
Sbjct: 1021 DLQMPHLDGYDATERLRCQQRFAHL-PILAMTAHAMPEERERCLAIGMNDHLAKPIDPTA 1079

Query: 634  VREVIAKMTQHHAGESVAKVKSNKEKELPDDLYQQLLDLEMLQSYVEIVGSQPVIDSVHL 693
            +   +A+  +   G S       K+     D    +  +   Q    + G+Q +   + L
Sbjct: 1080 LAATLARWYEERPGASAPAPTPAKD---GTDALPPIPGVNTTQGLARMAGNQALYRRLLL 1136

Query: 694  -FEQSMPAYLAVLDSNMVAKDQEGIVSEAHKIKGAAGSVGLKRIQKIA 740
             F  +       +   +   D       AH +KG AG++G + +Q+ A
Sbjct: 1137 RFVDTQTGTGEHIRQALADGDITAAEHLAHTLKGVAGNIGAEVLQQKA 1184