Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  200 bits (509), Expect = 5e-55
 Identities = 141/512 (27%), Positives = 258/512 (50%), Gaps = 17/512 (3%)

Query: 139  EVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGL 198
            +V +R+  + ELA   A  ++  D +   I   + KG    CN    E  G    EL   
Sbjct: 888  DVTERKSIEEELAVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRST 947

Query: 199  TPWDVYR---KEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGR 255
              +DV     K++A++  +  + V         E+    P G   +  +      +   +
Sbjct: 948  PIFDVLSAQDKDVAKA--QFKELVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQ 1005

Query: 256  HLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRML 308
                V    D+TE K   + L       + AS+ K  F++ +SHE+RTP+N I+G+S++ 
Sbjct: 1006 FESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLC 1065

Query: 309  LDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVL 368
            L T L  +Q+ +L+ I  ++ +L +I NDI+D  K +  KL++   +   +  + ++  +
Sbjct: 1066 LQTQLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDM 1125

Query: 369  AALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVS-AEC 427
             +  A QK +        ++P  +  D  RL QVL NL++NA+KFT+ G V++++S  E 
Sbjct: 1126 FSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1185

Query: 428  DAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMG 487
                  +   V D+GIG+ + +Q K+F  + Q  +     +  GTG+GLA+S+QL++LMG
Sbjct: 1186 QNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYG-GTGLGLAISKQLVELMG 1244

Query: 488  GDISVNSEEGFGSTFTVTIRVPLLAEAPIEIEPQEPQTELNIFMVEDIELNITVARSLLE 547
            G I V S+ G GSTF  T+++ + +   + +   +    ++I + +D      + R+ LE
Sbjct: 1245 GSIGVESQLGHGSTFFFTVKLCISSGQKLFV--GQELDGMSILVADDNATARDIMRTTLE 1302

Query: 548  SMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSSLPPLVALTA 607
            SMG  V    +G+EAI   +  EY +  +D ++P++ G + A   +    + P ++ ++A
Sbjct: 1303 SMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQIKQQTKNAPRILMVSA 1362

Query: 608  NVLKD-KEEYRQKGMDAAISKPLSVAAVREVI 638
            +  +D   +  Q G+   ISKP+S + + + I
Sbjct: 1363 HANQDFLTQIEQLGLAGYISKPISASRLLDGI 1394



 Score = 77.8 bits (190), Expect = 5e-18
 Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 20/231 (8%)

Query: 529  IFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDI 588
            I +VED E+N+ VA   LE +G  +++A  G+ A+       +DLV +D Q+P M G+  
Sbjct: 1426 ILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQA 1485

Query: 589  AHYYRTHYS-SLPPLVALTANVLK-DKEEYRQKGMDAAISKPLSVAAVREVIAKMTQHHA 646
                R     +  P++A+TAN +  DKE   + GM+  I+KP+ V  + + + K    + 
Sbjct: 1486 TKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLK----YL 1541

Query: 647  GESVAKVKSNKEKELPDDLYQQLLDLEMLQSYVEIV------GSQPVIDSVHLFEQ---- 696
            G  V  ++ N E  + + L    LD+E +  + E        G Q V +S  L+++    
Sbjct: 1542 GAPVPSLE-NAEFVVNESLNPLNLDVESVVKWPEHPELDIDRGLQLVQNSKRLYQRIFDR 1600

Query: 697  ---SMPAYLAVLDSNMVAKDQEGIVSEAHKIKGAAGSVGLKRIQKIAQKAQ 744
               S    +  ++  + +  +E  V  AH +KG AG++   ++ ++A++ +
Sbjct: 1601 FATSQRNVVDQINKALASNKREDAVRMAHTLKGLAGNLSSSKLAELARQLE 1651