Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 1005 a.a., sensory box histidine kinase/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  197 bits (501), Expect = 2e-54
 Identities = 136/415 (32%), Positives = 214/415 (51%), Gaps = 20/415 (4%)

Query: 245  RKVPFYNKDGRHLGLVGFGR-DITERKRH-------EESLEKASRDKTTFISTISHELRT 296
            +  PF   D + L L+  G  +  ER+R        +E  E A+R K+ F++ +SHELRT
Sbjct: 588  KPTPFTRADIKQLDLLMRGMLEHLERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRT 647

Query: 297  PLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAAL 356
            PLNG++G+ ++L    L  +Q + +     S  TL  + +DI+D+ + +  ++EL     
Sbjct: 648  PLNGMLGMLQLLEAGDLDRDQNELVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRF 707

Query: 357  NFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKE 416
            + EE V ++  + A  A  +GLR    R  +LP  V  D TRLRQ+L+NLL NAMKFT E
Sbjct: 708  SPEEAVRQVYDMFAQDARIRGLRLRW-RCDELPCEVWGDGTRLRQILFNLLGNAMKFTHE 766

Query: 417  GGVVMTVSA-ECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIG 475
            G V + V A     +   +   V DTGIGIP      IF  + Q+  G       GTG+G
Sbjct: 767  GTVGVEVCAVRRTEESVRLLFSVSDTGIGIPHDRLMSIFEPFTQL-DGSTTRRYSGTGLG 825

Query: 476  LAVSRQLIKLMGGDISVNSEEGFGSTFTVTI--RVPLLAEAPIEIEPQEP--QTELNIFM 531
            L + R+L+ LMGG ++V S  G G+   V +  R+P       ++    P  +  L + +
Sbjct: 826  LGIVRRLVHLMGGGLNVESALGEGTAVHVCLPFRLPSGGGVTCDVMDSTPALRRPLKVLV 885

Query: 532  VEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHY 591
             ED  +N       L  +GH+      G EA++      +D V +DIQ+P++ G +    
Sbjct: 886  AEDEAVNRMTLSRCLHHLGHEAVCVTNGLEAVEALREGRFDCVLMDIQMPELDGLEALAR 945

Query: 592  YRTHYS----SLPPLVALTANVLK-DKEEYRQKGMDAAISKPLSVAAVREVIAKM 641
             R        +LPP+VALTA+ ++ D+E +   GM A I KP+ +  +  V+ ++
Sbjct: 946  IRAEAGEQARALPPVVALTAHAMEGDRERFLAAGMSAYIPKPIELGELERVLLRL 1000



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 25/139 (17%), Positives = 55/139 (39%)

Query: 136 LENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESEL 195
           +  ++   ++T   L       R+ ++  PD++   +A+G     N A+      +    
Sbjct: 158 ISEDITAAQETGAALVTSERGYRTLVENIPDIVVRFDARGRLLFANPALRRFVRSKRLPS 217

Query: 196 VGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGR 255
             +T   + ++      +    Q+  ++  +   +  E     + FFE R VP    DG 
Sbjct: 218 GHVTGQPLGQQPAMLRELRERVQLAMSSGEVQRAELEERTRQGRRFFEWRIVPEPAPDGG 277

Query: 256 HLGLVGFGRDITERKRHEE 274
              ++  GRD++  +R  E
Sbjct: 278 DATVLCIGRDVSAMRRATE 296



 Score = 26.6 bits (57), Expect = 0.007
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 177 FSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPD 236
           F   N A E +TG   SE+VG T  DV    +    ++   QV      +T+E +     
Sbjct: 327 FLAVNPAFERMTGLLASEMVGRTARDVL-PGLESEWLQRYGQVALTGVPVTFEAF----- 380

Query: 237 GRKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESLEKASR 281
             +   +  KV  Y    R    +    D+T+R R  E     +R
Sbjct: 381 -NRDLGKYFKVSAYRPAERQFACM--FHDVTDRVRGREERRSNAR 422