Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., PAS-family sensor histidine kinase from Caulobacter crescentus NA1000

 Score =  220 bits (561), Expect = 2e-61
 Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 17/414 (4%)

Query: 241 FFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESLEKASRD-------KTTFISTISHE 293
           F E+R+    +  G+ L  VG   DI E+K+ E +L +A R        K  F++ +SHE
Sbjct: 483 FHEVRR----DGQGKALKAVGLILDIDEKKKAELALIEAERAAQAANEAKAQFLANMSHE 538

Query: 294 LRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFP 353
           +RTP+NG++G+  +L      G+    L     +   L  + +D+ID+ + +  +L+L  
Sbjct: 539 IRTPMNGVLGVMHVLKRELPPGDSASLLNEALAAGQMLSTLLDDVIDISRIEAGRLDLNH 598

Query: 354 AALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKF 413
             ++  + V  +  L A  A  KGLR +L+   DL   +E D TR+RQ L+NL+ NA+KF
Sbjct: 599 EPVDPRDLVRGVARLLATQAAHKGLRLELDLPDDL-GWIETDPTRVRQALFNLIGNAVKF 657

Query: 414 TKEGGVVMTVSAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTG 473
           T +G V +            +  ++ DTG+G+P   Q+++F  + Q  +G       G+G
Sbjct: 658 TLKGSVTVRAQRRITDAGPYLVFDIIDTGVGVPLEAQKRLFERFQQADAGTTRRFG-GSG 716

Query: 474 IGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEI-EPQEPQTELNIFMV 532
           +GLA++R+L +++GG++S  S  G GSTF++TI  P +     +  E  E  T L + +V
Sbjct: 717 LGLAITRKLARMLGGEVSFRSVPGEGSTFSLTIAAPPVGPPSAQAGETSELLTSLKVLVV 776

Query: 533 EDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYY 592
           ED   N  VAR +LE +G +V+VA  G   ++      +DL+ +D+Q+P M G + A   
Sbjct: 777 EDNPTNQLVARRILEQLGAEVSVADDGAAGVEAAERGRFDLILMDVQMPGMDGLEAARRI 836

Query: 593 RT--HYSSLPPLVALTANVL-KDKEEYRQKGMDAAISKPLSVAAVREVIAKMTQ 643
           R     +   P++ALTANV+   +  YR  GMD   +KP+S AA+   I ++++
Sbjct: 837 RALPGPAGRAPIIALTANVMAHQRAAYRAAGMDGVAAKPISPAALVAEILRLSR 890



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217
           R F D + DL    +A+G F   N A   LTG    ELVG         +    +V+T +
Sbjct: 22  RWFFDNASDLFTVISAEGRFISVNDAWSHLTGWARDELVGQPTIKFVHPDSQAELVDTGR 81

Query: 218 QVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESLE 277
           ++    +AI  E  +   DGR  + + R     ++ G H  +VG   DI+        LE
Sbjct: 82  RLRQTGSAIN-ELKIRCKDGRWIWLQGR-----SRLGPHGEMVGVMHDISAEVEARLELE 135

Query: 278 KASR 281
            A R
Sbjct: 136 AARR 139