Pairwise Alignments

Query, 238 a.a., two-component system response regulator ArcA from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  145 bits (366), Expect = 7e-40
 Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 6   ILIVEDEQVTRNTLKSIFEAEGYAVFEASNGEEMHQVLSDYPINLVIMDINLPGKNGLLL 65
           IL+V+D+Q  R  L++     G+ V    +G E    L   P +LVI+D+ LP ++G  L
Sbjct: 8   ILLVDDDQEIRELLQTYLSRSGFQVRGVPDGGEFRAALCAEPADLVILDVMLPDEDGFSL 67

Query: 66  ARELREQ---ADVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRSM 122
            R +R+    A + ++ LT   +E D+++GLE+GADDY+ KPF+PREL  R + LL R  
Sbjct: 68  CRWIRQHERLASMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRRVS 127

Query: 123 HAGTTQEEKRSVEKYVFNGWELDINSRSLVSPDGDSYKLPRSEFRALLHFCENPGKIQTR 182
            A     ++R  +   F+ W LD+ S  L   DG+   L  ++F  L  F ++P +I  R
Sbjct: 128 FA-----QERGSDVLAFDEWRLDMISHRLFHADGEEVFLSGADFALLKLFLDHPQQILDR 182

Query: 183 ADLLKKMTGRELKPHDRTVDVTIRRIRKHFESVSGTPEIIATIHGEGY 230
             +     GRE+ P +R VD+ + R+R+       +P +I T+ G GY
Sbjct: 183 DTIANATRGREVMPLERIVDMAVSRLRQRLRDTGKSPRLIRTVRGSGY 230